View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8637_low_3 (Length: 343)

Name: NF8637_low_3
Description: NF8637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8637_low_3
NF8637_low_3
[»] chr8 (4 HSPs)
chr8 (19-304)||(10382460-10382743)
chr8 (19-305)||(9484318-9484600)
chr8 (187-234)||(9484854-9484902)
chr8 (187-234)||(10382158-10382206)
[»] chr4 (1 HSPs)
chr4 (19-234)||(52721040-52721234)
[»] chr3 (3 HSPs)
chr3 (112-166)||(46993711-46993765)
chr3 (196-305)||(41639026-41639132)
chr3 (196-234)||(46993441-46993479)
[»] chr5 (7 HSPs)
chr5 (297-342)||(580127-580172)
chr5 (178-234)||(3136044-3136101)
chr5 (187-305)||(25074914-25075030)
chr5 (187-305)||(25132883-25132999)
chr5 (196-234)||(3136427-3136465)
chr5 (187-234)||(25074404-25074452)
chr5 (187-234)||(25132373-25132421)
[»] chr6 (2 HSPs)
chr6 (180-233)||(1018687-1018741)
chr6 (187-302)||(2038652-2038765)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 10382460 - 10382743
Alignment:
Q  19 acacagtacacaaaagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaattaaatgtaatcaccatcagatgggt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  10382460 acacagtacacaaaagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaattaaatgtaatcaccaccatatgggt 10382559  T
Q  119 ctcttgattttttaatcaagaagtataagatcaatttttacagcttatgaaatttttaaaggttgtttgatgttgctgtggtggggaggaaggagagaga 218  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10382560 ctcttcattttttaatcaagaagtataatatcaatttttacagcttatggaatttttaaaggttgtttgatgttgctgtggtggggaggaaggagagaga 10382659  T
Q  219 agggtggttgaaggtgnnnnnnngaaataatctagtgttagaaagtgtacgatgaaattatattcttcatttaatctaatggctaa 304  Q
    ||||||||||||||||       ||||||||||| |||| | ||||||||||| ||| | | |||||||||| |||||||| ||||    
T  10382660 agggtggttgaaggtg-aaaaaagaaataatctaatgtt-ggaagtgtacgataaaactgtgttcttcatttgatctaatgactaa 10382743  T

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Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 9484600 - 9484318
Alignment:
Q  19 acacagtacacaaaagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaattaaatgtaatcaccatcagatgggt 118  Q
    |||||||||||  ||| |||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9484600 acacagtacactgaagtacacattggacatgagtgagaccatca--taagcatgtaatagtttaacaaattaaattaaatgtaatcaccaccagatgggt 9484503  T
Q  119 ctcttgattttttaatcaagaagtataagatcaatttttacagcttatgaaatttttaaaggttgtttgatgttgctgtggtggggaggaaggagagaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  9484502 ctcttgattttttaatcaagaagtataagatcaatttttacagcttatagaatttttacatgttgtttgatgttgctgtggtggggaggaaggagagaga 9484403  T
Q  219 agggtggttgaaggtgnnnnnnngaaataatctagtgttagaaagtgtacgatgaaattatattcttcatttaatctaatggctaaa 305  Q
    ||||||||||||||||       ||||||||||||| || ||||||||| ||| ||| | | ||||||||||||| |||||| ||||    
T  9484402 agggtggttgaaggtg-gaaaaagaaataatctagtatt-gaaagtgtatgataaaactgtgttcttcatttaatttaatggttaaa 9484318  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 9484854 - 9484902
Alignment:
Q  187 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtg 234  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||||||    
T  9484854 gatgttgctggtggtggggaggaaggagagagaagagtggtggaaggtg 9484902  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 10382206 - 10382158
Alignment:
Q  187 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtg 234  Q
    |||||||||| | |||||||||||||||||||||| ||||| |||||||    
T  10382206 gatgttgctggtagtggggaggaaggagagagaagagtggtggaaggtg 10382158  T

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Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 52721040 - 52721234
Alignment:
Q  19 acacagtacacaaaagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaattaaatgtaatcaccatcagatgggt 118  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||    
T  52721040 acacagtacacagaagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaat---------------------gggt 52721118  T
Q  119 ctcttgattttttaatcaagaagtataagatcaatttttacagcttatgaaatttttaaaggttgtttgatgttgctgtggtggggaggaaggagagaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  52721119 ctcttgattttttaatcaagaagtataagatcaatttttacagcttatggaatttttacgggttgtttgatgttgctgtggtggggaggaaggagagaga 52721218  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 46993765 - 46993711
Alignment:
Q  112 gatgggtctcttgattttttaatcaagaagtataagatcaatttttacagcttat 166  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  46993765 gatgggtcacttgattttttaatcaagaaggataagatcaatttttacagcttat 46993711  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 41639026 - 41639132
Alignment:
Q  196 gtggtggggaggaaggagagagaagggtggttgaaggtgnnnnnnngaaataatctagtgttagaaagtgtacgatgaaattatattcttcatttaatct 295  Q
    ||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||| |||||||| || | ||| | ||||  | |||||||    
T  41639026 gtggtggggaggaaggagagagaagggtggtggaaggtg--taaaagaaataatctagtgttag-aagtgtaccataagattgtgttctcaaattaatct 41639122  T
Q  296 aatggctaaa 305  Q
    ||||||||||    
T  41639123 aatggctaaa 41639132  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 46993479 - 46993441
Alignment:
Q  196 gtggtggggaggaaggagagagaagggtggttgaaggtg 234  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  46993479 gtggtggggaggaaggagagaaaagggtggtggaaggtg 46993441  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 580172 - 580127
Alignment:
Q  297 atggctaaactatcgttaagaaggagcgctctgtcaacaaaggtgg 342  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  580172 atggctaaactatcgttaagaagaagcgctctgtcaacaaaggtgg 580127  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 3136101 - 3136044
Alignment:
Q  178 aggttgtttgatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtg 234  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||    
T  3136101 aggttgtttgatgttggtggtggtggggaggaaggagagagaagggtggtggaaggtg 3136044  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 25074914 - 25075030
Alignment:
Q  187 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtgnnnnnnngaaataatctagtgttagaaagtgtacgatgaaattatattctt 285  Q
    |||||||||| |||||||||||||| |||||||| |||||| |||||||       |||||||||||||||| |||||||||| ||   ||| | |||||    
T  25074914 gatgttgctggtggtggggaggaagaagagagaatggtggtggaaggtg--taaaagaaataatctagtgtt-gaaagtgtaccatatgattgtgttctt 25075010  T
Q  286 catttaatctaatggctaaa 305  Q
    || |||||||||||||||||    
T  25075011 caattaatctaatggctaaa 25075030  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 25132883 - 25132999
Alignment:
Q  187 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtgnnnnnnngaaataatctagtgttagaaagtgtacgatgaaattatattctt 285  Q
    |||||||||| |||||||||||||| |||||||| |||||| |||||||       |||||||||||||||| |||||||||| ||   ||| | |||||    
T  25132883 gatgttgctggtggtggggaggaagaagagagaatggtggtggaaggtg--taaaagaaataatctagtgtt-gaaagtgtaccatatgattgtgttctt 25132979  T
Q  286 catttaatctaatggctaaa 305  Q
    || |||||||||||||||||    
T  25132980 caattaatctaatggctaaa 25132999  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 3136427 - 3136465
Alignment:
Q  196 gtggtggggaggaaggagagagaagggtggttgaaggtg 234  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  3136427 gtggtggggaggaaggagagagaaaggtggtggaaggtg 3136465  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 25074452 - 25074404
Alignment:
Q  187 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtg 234  Q
    |||||||||| |||||| |||||||||||||||| |||||| |||||||    
T  25074452 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaggtg 25074404  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 25132421 - 25132373
Alignment:
Q  187 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtg 234  Q
    |||||||||| |||||| |||||||||||||||| |||||| |||||||    
T  25132421 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaggtg 25132373  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 1018741 - 1018687
Alignment:
Q  180 gttgtttgatgttgct-gtggtggggaggaaggagagagaagggtggttgaaggt 233  Q
    |||||||||||||||| || || | ||||||||||||||||||||||| ||||||    
T  1018741 gttgtttgatgttgcttgtagtagtgaggaaggagagagaagggtggtggaaggt 1018687  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 2038765 - 2038652
Alignment:
Q  187 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtgnnnnnnngaaataatctagtgttagaaagtgtacgatgaaattatattctt 285  Q
    |||||||||| |||||||||||||| |||||||| |||||| |||||||       ||||||||||||| || |||| ||||| ||   ||| |||||||    
T  2038765 gatgttgctggtggtggggaggaagaagagagaatggtggtggaaggtg--taaaagaaataatctagtatt-gaaaatgtaccatatgattgtattctt 2038669  T
Q  286 catttaatctaatggct 302  Q
    || ||||||||||||||    
T  2038668 caattaatctaatggct 2038652  T

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