View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8637_low_4 (Length: 310)
Name: NF8637_low_4
Description: NF8637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8637_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 38348768 - 38348477
Alignment:
| Q |
1 |
aaaaaaggtagtaataagtaataacaaagcacgcctgccagaacataacagaaactaagaaaggaataaacgagagatgcttcttctaacagtaatttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38348768 |
aaaaaaggtagtaataagtaataacaaagcacgcctgccagaacataacagaaactaagaaaggaataaacgagagatgcttcttctaacagtaatttca |
38348669 |
T |
|
| Q |
101 |
ctcaccttttaggtttaaagtttgttgtgcgtctttcagtatgttgaagagatcgttaggattaggaacttggtccacaaaataggaaagagtgaggctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38348668 |
ctcaccttttaggtttaaagtttgttgtgtgtctttcagtatgttgaagagatcgttaggattaggaacttggtccacaaaataggaaagagtgaggctg |
38348569 |
T |
|
| Q |
201 |
tcacagcatgacctagtcaaggttagggttacttactctctcttctttccattcaaaagaaagctctctaaccaaagtttagatcatgctgg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38348568 |
tcacagcatgacctagtcaaggttagggttacttactctctcttctttccattcaaaagaaagctctctaaccaaagtttagatcatgctgg |
38348477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 31573063 - 31573108
Alignment:
| Q |
180 |
aaataggaaagagtgaggctgtcacagcatgacctagtcaaggtta |
225 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
31573063 |
aaataggaaggagtgaggctagcacagcatgacctagtcagggtta |
31573108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University