View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8637_low_9 (Length: 225)
Name: NF8637_low_9
Description: NF8637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8637_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 56 - 213
Target Start/End: Complemental strand, 33024458 - 33024302
Alignment:
| Q |
56 |
tttttcatatgaatgacgtgttacgaattttccatatatagctaaagccaaaatgtatactggtttaggagatccggaatatctacaaaacacaaaaatg |
155 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33024458 |
tttttcatatgaacgacgcgttacgaattttccatatatagctaaagccaaaatgtatactggtttaggagatccggaatatctacaaaacacgaaaatg |
33024359 |
T |
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| Q |
156 |
ttcctttatgttccgatctcatttaaaggataaattggtatagattaatacgagaata |
213 |
Q |
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| T |
33024358 |
ttcctttatgttccgatctcatttaaa-gataaattggtatagattaatacgagaata |
33024302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 33024687 - 33024643
Alignment:
| Q |
20 |
ttttatattctaataatattgtatctgggttgaacatttttcata |
64 |
Q |
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||||||||||||||||| |||||| ||||| |||||||||||||| |
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| T |
33024687 |
ttttatattctaataatcttgtatatgggtcgaacatttttcata |
33024643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 18177124 - 18177263
Alignment:
| Q |
56 |
tttttcatatgaatgacgtgttacgaattttccatatatagctaaagccaaaatgtatactggtttaggagatccggaatatctacaaaacacaaaaatg |
155 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18177124 |
tttttcatatgaacgacgcgttacgaattttccatatatagctaaagccaaaatgtatactggtttaggagatccggaatatctacaaaacacgaaaatg |
18177223 |
T |
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| Q |
156 |
ttcctttatgttccgatctcatttaaaggataaattggtat |
196 |
Q |
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| T |
18177224 |
ttcctttatgttccgatctcatttaaa-gataaattggtat |
18177263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 18176895 - 18176939
Alignment:
| Q |
20 |
ttttatattctaataatattgtatctgggttgaacatttttcata |
64 |
Q |
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||||||||||||||||| |||||| ||||| |||||||||||||| |
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| T |
18176895 |
ttttatattctaataatcttgtatatgggtcgaacatttttcata |
18176939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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