View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_high_17 (Length: 311)
Name: NF8638_high_17
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 27333162 - 27332876
Alignment:
| Q |
9 |
tggtgttccatgagtagagatttgggtggggcatttgatcgaacaccttgcgggcgtaagggattgagccgagtttggcataggaactgatgagattgtt |
108 |
Q |
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| T |
27333162 |
tggtgttccatgagtagagatttgggtggggcatttgatcgaacaccttgctggcgtaagggattgagccgagtttggcataggaactgatgagattgtt |
27333063 |
T |
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| Q |
109 |
taagaggaaggtttcagggtatggaagggttttgatgatgtgagaatggaggttttttgctttggtgaagttgcgagtttcgcagcagagtttgagtaat |
208 |
Q |
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| T |
27333062 |
taagaggaaggtttcagggtatggaagggttttgatgatgtgagaatggaggttttttgctttggtgaagttgtgagtttcgcagcaaagtttgagtaat |
27332963 |
T |
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| Q |
209 |
gcacagtaatggtttgaggaagaagagtgtgagagtgacatgtatttggaattgtagtgttatgcagagtgattgtgaggaatggaa |
295 |
Q |
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| T |
27332962 |
gcacagtaatggtttgaggaagaagagtgtgagagtgacatgtatttggaattgtagtgtaatgtagagtgattgtgaggaatggaa |
27332876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 29180611 - 29180839
Alignment:
| Q |
9 |
tggtgttccatgagtagagatttgggtggggcatttgatcgaacaccttgcgggcgtaagggattgagccgagtttggcataggaactgatgagattgtt |
108 |
Q |
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| T |
29180611 |
tggtgttccatgagtagagatttgggtggggcatttgatcgaacaccttgcaggcgtaagggattgagccgagtttggcataggaactgatgagattgtt |
29180710 |
T |
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| Q |
109 |
taagaggaaggtttcagggtatggaagggttttgatgatgtgagaatggaggttttttgctttggtgaagttgcgagtttcgcagcagagtttgagtaat |
208 |
Q |
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| T |
29180711 |
taagaggaaggtttcagggtatggaagggttttgatgatgtgagaatggaggttttttgctttggtgaagttgcgagtttcgcagcagagtttgagtaat |
29180810 |
T |
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| Q |
209 |
gcacagtaatggtttgaggaagaagagtg |
237 |
Q |
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| T |
29180811 |
gcacagtaatggtttgaggaagaacagtg |
29180839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 84 - 295
Target Start/End: Original strand, 56506026 - 56506237
Alignment:
| Q |
84 |
tggcataggaactgatgagattgtttaagaggaaggtttcagggtatggaagggttttgatgatgtgagaatggaggttttttgctttggtgaagttgcg |
183 |
Q |
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| T |
56506026 |
tggcataggaactgatgagattgtttaagaggaaggtttcagggtatggaagggttttgatgatgtgagaatggagggtttttgctttggtgaagttgcg |
56506125 |
T |
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| Q |
184 |
agtttcgcagcagagtttgagtaatgcacagtaatggtttgaggaagaagagtgtgagagtgacatgtatttggaattgtagtgttatgcagagtgattg |
283 |
Q |
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| T |
56506126 |
ggtttcgcagtagagtttgagtaatgcacagtaatgatttgaggaagaagagtgtgagagtgacatggatttggaattagagtgttatgtagagtgattg |
56506225 |
T |
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| Q |
284 |
tgaggaatggaa |
295 |
Q |
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|||||||||||| |
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| T |
56506226 |
tgaggaatggaa |
56506237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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