View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8638_high_21 (Length: 242)

Name: NF8638_high_21
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8638_high_21
NF8638_high_21
[»] chr4 (2 HSPs)
chr4 (76-225)||(2091431-2091579)
chr4 (175-225)||(51313474-51313524)
[»] chr5 (3 HSPs)
chr5 (175-225)||(38244093-38244143)
chr5 (172-225)||(19087860-19087913)
chr5 (173-225)||(17768090-17768142)
[»] chr3 (1 HSPs)
chr3 (175-225)||(29398540-29398590)
[»] chr7 (3 HSPs)
chr7 (173-225)||(12423728-12423780)
chr7 (175-225)||(28038480-28038530)
chr7 (173-225)||(35274495-35274547)
[»] chr2 (2 HSPs)
chr2 (173-225)||(33853835-33853887)
chr2 (173-225)||(25551997-25552049)
[»] chr1 (3 HSPs)
chr1 (173-225)||(47911855-47911907)
chr1 (173-225)||(457655-457707)
chr1 (173-225)||(30412602-30412654)
[»] chr6 (1 HSPs)
chr6 (175-223)||(7055643-7055691)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 2091579 - 2091431
Alignment:
Q  76 agggtaatttgaaaattaagtcataatttcttattctcaaatcaaactaattaannnnnnnnaactcttgtactatatgttaaagatatactcatgtggt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||         || |||||||||||||||||||||||||||| ||||||    
T  2091579 agggtaatttgaaaattaagtcataatttcttattctcaaatcaaactaacta-ctttttttaattcttgtactatatgttaaagatatactcctgtggt 2091481  T
Q  176 cacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2091480 cacatttataaacaaaaatatattttttaggttaattgaatacataatgt 2091431  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 51313474 - 51313524
Alignment:
Q  175 tcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||||||| |||||||||| || ||||||| || ||||||||||||||||    
T  51313474 tcacatttataaacaaaaatgtactttttagcttcattgaatacataatgt 51313524  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 38244093 - 38244143
Alignment:
Q  175 tcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||||||||||||    
T  38244093 tcacatttataaacaaaaatatgttttttaagtttattgaatacataatgt 38244143  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 19087913 - 19087860
Alignment:
Q  172 tggtcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    |||||||||||| || ||||||| || |||||||||| ||||||||||||||||    
T  19087913 tggtcacatttataagcaaaaatgtactttttaggttcattgaatacataatgt 19087860  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 17768142 - 17768090
Alignment:
Q  173 ggtcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    |||||||| || || ||||||  ||||||||||||| ||||||||||||||||    
T  17768142 ggtcacatatataagcaaaaaattattttttaggttcattgaatacataatgt 17768090  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 29398590 - 29398540
Alignment:
Q  175 tcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||||||| ||  |||||||||||||||||||| ||||||||||||||||    
T  29398590 tcacatttataagaaaaaatatattttttaggttcattgaatacataatgt 29398540  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 12423780 - 12423728
Alignment:
Q  173 ggtcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||||||||| || ||||||| || |||||||||| ||||||||||||||||    
T  12423780 ggtcacatttataagcaaaaatgtactttttaggttcattgaatacataatgt 12423728  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 28038480 - 28038530
Alignment:
Q  175 tcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||||||| || ||||||| ||||||||||||  ||||||||||||||||    
T  28038480 tcacatttataagcaaaaatgtattttttaggtacattgaatacataatgt 28038530  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 35274547 - 35274495
Alignment:
Q  173 ggtcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||||||||| || |||||||  | |||||||||| ||||||||||||||||    
T  35274547 ggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgt 35274495  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 33853835 - 33853887
Alignment:
Q  173 ggtcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||| ||||| |||||||||| || |||||||||| ||||||||||||||||    
T  33853835 ggtcatatttataaacaaaaatgtactttttaggttcattgaatacataatgt 33853887  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 25552049 - 25551997
Alignment:
Q  173 ggtcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||| ||||| |||||||||| |||||| || ||| ||||||||||||||||    
T  25552049 ggtcatatttataaacaaaaatgtattttgtaagttcattgaatacataatgt 25551997  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 47911855 - 47911907
Alignment:
Q  173 ggtcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||||||||| ||||||||||  | |||||||||| ||||||||||||||||    
T  47911855 ggtcacatttataaacaaaaatgcactttttaggttcattgaatacataatgt 47911907  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 457707 - 457655
Alignment:
Q  173 ggtcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||||||||| || |||||||  | |||||||||| ||||||||||||||||    
T  457707 ggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgt 457655  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 30412602 - 30412654
Alignment:
Q  173 ggtcacatttagaaacaaaaatatattttttaggttaattgaatacataatgt 225  Q
    ||||||||||| || |||||||  | |||||||||| ||||||||||||||||    
T  30412602 ggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgt 30412654  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 7055691 - 7055643
Alignment:
Q  175 tcacatttagaaacaaaaatatattttttaggttaattgaatacataat 223  Q
    ||||||||| || ||||||| || |||||||||| ||||||||||||||    
T  7055691 tcacatttataagcaaaaatgtactttttaggttcattgaatacataat 7055643  T

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