View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_high_3 (Length: 554)
Name: NF8638_high_3
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 3153631 - 3153089
Alignment:
| Q |
1 |
cttttgtctgtgatgcagcatatatccaaataccatacgaaacgtgaaatatgtaaggacggaaacgcctttatatttttgctactcgtgtttgtattgt |
100 |
Q |
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| T |
3153631 |
cttttgtctgtgatgcagcatatatccaaataccatacgaaacgtgaaatatgtaaggaaggaaacacctttatatttt-gctactcgtgtttgtattgt |
3153533 |
T |
|
| Q |
101 |
tctttctgttaagcagaaccatagaatggctaatcagtttgttgttgtttatattaaaatagtacctctttgatatttcccttgagtacattttagttat |
200 |
Q |
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| T |
3153532 |
tctttttgttaagcagaaccatagaatggctaatcagtttgttgttgtttatattaaaatagtacctctttgatatttcccttgagtacattttagttat |
3153433 |
T |
|
| Q |
201 |
atatgcatcaaatttatctgtattctcgggattcaatctctcttgctctttctatgtgtgttgtttgtcaatacctttcacagtatttatgtagagatgg |
300 |
Q |
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| T |
3153432 |
atatgcatcaaatttatctgtattctcgggattcaatctctcttgctctttctatgtgtgttgtttgtcaatacctttcacagtatttatgtagagatgg |
3153333 |
T |
|
| Q |
301 |
caattttaaacatattaaaattgacttattggcagattattagaagcaactctttgacttatatactaactaagtttatatgctgctagcaaacaagtaa |
400 |
Q |
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| T |
3153332 |
caattttaaacatattaaaattgacttattggcagattattagaagcaactctttgacttatatactaactaagtttatatgctgctagcaaacaagtaa |
3153233 |
T |
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| Q |
401 |
ttctaactaaactattattctcaacagagctacttgcatgctggaactgcatattaacatttttcaactttaa---atgagtaagcg----taaagtcaa |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
3153232 |
ttctaactaaactattattctcaacagagctacttgcatgctggaactgcatattaacatttttcaactttaaatgatgagtaagcgtaaataaagtcaa |
3153133 |
T |
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| Q |
494 |
aatgaatcacactctctaatgaaagtgtaggtgtacgagacaat |
537 |
Q |
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| T |
3153132 |
aatgaatcacactctctaatgaaagtgtaggtgtacgagacaat |
3153089 |
T |
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