View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_high_6 (Length: 444)
Name: NF8638_high_6
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 28969051 - 28968627
Alignment:
| Q |
1 |
aaaacaagagaaagaaaatgatagaaaatattgcaagttcaatcataattttcttatggaatatgaaagaagatgtttacaagtatttatatttttgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28969051 |
aaaacaagagaaagaaaatgatagaaaatattgcaagttcaatcataattttctgatggaatatgaaagaagatgtttacaagtatttatatttttaaag |
28968952 |
T |
|
| Q |
101 |
tgagggattatgctaagctattatcatgtgtttatccttgcaagattataaccaacttttcttagaacaagggatgtatatataacggttttctcatcaa |
200 |
Q |
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| T |
28968951 |
tgagggattatgctaagctattatcatgtgtttatccctgcaagattataactaacttt-catagaacaagggacgcatatataacgtttttctcatcaa |
28968853 |
T |
|
| Q |
201 |
ctagaaatgagcttagacaatgatatcttgtgctacaagaaactatggtctatggttttcttcgtccttatcaagtagatcagcttaattgattctatct |
300 |
Q |
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| T |
28968852 |
ctagaaactagcttagacaatgatatcttgtgctacaagaaactatggtctatggttttcttcttccttatcaagtagatcagcttaattgattctatct |
28968753 |
T |
|
| Q |
301 |
catctatgttattcttcaatacttttgatggagtcggagactaattccttaaattcaagattaggtcaagagagttgtagatctaaagtgaatgttatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28968752 |
catctatgttattcttcaatacttttgatggagtcggagactaattccttaaattcaagattaggtcaagagagttgtagatctaaagtgaatgttatta |
28968653 |
T |
|
| Q |
401 |
ggtaagataataagttacgatataaa |
426 |
Q |
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| T |
28968652 |
ggtaagataataagttacgatataaa |
28968627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 24698025 - 24698173
Alignment:
| Q |
10 |
gaaagaaaatgatagaaaatattgcaagttcaatcataattttctt-atggaatatgaaagaag-atgtttacaagtatttatatttttgaagtgaggga |
107 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||| ||| |||||||||||||||||| |||| ||||||||| |
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| T |
24698025 |
gaaagaaaatgatagaaaatattgcaagttgaatcataaatttcttgattgaatatgaaaaaagcctgtttacaagtatttatagttttacagtgaggga |
24698124 |
T |
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| Q |
108 |
ttatgctaagctattatcatgtgtttatccttgcaagattataaccaacttt |
159 |
Q |
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| T |
24698125 |
taatgctaagc---aatcatgtgttcattcttacaagattataactaacttt |
24698173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 24698291 - 24698323
Alignment:
| Q |
289 |
ttgattctatctcatctatgttattcttcaata |
321 |
Q |
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| T |
24698291 |
ttgattctatctcatctatattattcttcaata |
24698323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28970332 - 28970304
Alignment:
| Q |
1 |
aaaacaagagaaagaaaatgatagaaaat |
29 |
Q |
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| T |
28970332 |
aaaacaagagaaagaaaatgatagaaaat |
28970304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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