View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_low_10 (Length: 437)
Name: NF8638_low_10
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 24221870 - 24222281
Alignment:
| Q |
19 |
taaagatcttccatttcccatggcatcaacaaatacaacttcatagggatcattattagccaggaccagaagtcttccagtaaagtcattatgcctccca |
118 |
Q |
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| T |
24221870 |
taaagatcttcaatttcccatggcatcaacaaatacaacttcatagggatcattattagccaggaccagaagtcttccagtaaagtcatcatgcctccca |
24221969 |
T |
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| Q |
119 |
atatcataacaagcaccaggtggggcagtgatatctggacagaacacaagcttgtatccaaaaccatttttctgaattttaaagaaaccatttatgatat |
218 |
Q |
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| T |
24221970 |
atatcataacaagcaccaggtggggcagtgatatctggacagaacacaagcttgtatccaaaaccatgtttctgaattttaaagaaaccatttatgatat |
24222069 |
T |
|
| Q |
219 |
gcttaccttcattatcttcagtaccaccaataccaacccatggtccagttaatttgttaaaatcatcaaccaacacccacttggaggattcagcacagtc |
318 |
Q |
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| T |
24222070 |
gcttaccttcattatcttcagtaccaccaataccaacccatggtccagttaatttgttaaaatcatcaaccaacacccacttggaggattcagcacagtc |
24222169 |
T |
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| Q |
319 |
gggctttgttgtaaatgcgatatcaagtgctgtgtttgttgagattatatcatggcctgcttctagcctggtaaactttacaggcagaccattgacaacc |
418 |
Q |
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| T |
24222170 |
gggctttgttgtaaatgcgatatcaagtgctgtgtttgttgagattatatcatggcctgcttctagcctggtaaactttacaggcagaccattgacaacc |
24222269 |
T |
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| Q |
419 |
tcagaataatct |
430 |
Q |
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| T |
24222270 |
tcagaataatct |
24222281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 263
Target Start/End: Original strand, 20460543 - 20460694
Alignment:
| Q |
112 |
cctcccaatatcataacaagcaccaggtggggcagtgatatct-ggacagaacacaagcttgtatccaaaaccatttttctgaattttaaagaaaccatt |
210 |
Q |
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| T |
20460543 |
cctcccaatatcatgacaaagacctggtggagcagtga-atgtaggacaaaacacaagtttgtatccaaaaccatgtttcacgattttaaacttaccatc |
20460641 |
T |
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| Q |
211 |
tatgatatgcttaccttcattatcttcagtaccaccaataccaacccatggtc |
263 |
Q |
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| T |
20460642 |
tatgatatgcttacctatatagtcttcaataccaccaataccaacccatggtc |
20460694 |
T |
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