View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_low_12 (Length: 395)
Name: NF8638_low_12
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 7229457 - 7229801
Alignment:
| Q |
16 |
agcagagatcgaaaactattatgttgtagccacaatcgcagtataggcccattttaaaaaccctaattatgaaaatcacaccattgcctcacctttcttt |
115 |
Q |
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| T |
7229457 |
agcagagatcaaaaactatgatgttgtagccacaaccgcagtataggcccattttaaaaaccctaattatgaaaatcacgccattgcctcgcctttcttt |
7229556 |
T |
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| Q |
116 |
tgcaaaccctaatcatgacaatcgcggtatcgttccatttaaaaaccctaattatgataatcacgccattgtctcaccttacatttgcgaaccctaaata |
215 |
Q |
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| T |
7229557 |
tgcaaaccttagtcatgacaatcgcggtatcgttccatttaaaaaccctaattatgataatcacgccattgtctcacctttcatttgcgaaccctaaata |
7229656 |
T |
|
| Q |
216 |
tgacaatcacgctacaatcgcggtatcattccattttaaaaccctaactatgacagtcacaccacaatcatttccattctaaaaacgctaattaagatga |
315 |
Q |
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| T |
7229657 |
tgacaatcacgtcacaatcgcggtatcattccattttaaaaccctaactatgacagtcacaccacaatcatttccattctaaaaacgctaattaagatga |
7229756 |
T |
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| Q |
316 |
attccaacacccactaaacagaacttcacattatcatcaacaagt |
360 |
Q |
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| T |
7229757 |
attccaacacccactaaacagaacttcacattatcatcaacaagt |
7229801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 142 - 360
Target Start/End: Original strand, 42895418 - 42895645
Alignment:
| Q |
142 |
gtatcgttccatttaaaaaccctaattatgataatcacgccattgtctcaccttacatttgcgaaccctaaatatgacaatcacgctacaatcgcggtat |
241 |
Q |
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| T |
42895418 |
gtatcggttcattttaaaaccctaattatgacaatcacgccattgcctcacctttcttttgcaaaccctaattactacaatcacgccacaattgtggtgt |
42895517 |
T |
|
| Q |
242 |
cattccatttta-aaaccctaactatgacagtcacaccacaatcat-------ttccattctaaaaacgctaattaagatgaattccaacacccactaaa |
333 |
Q |
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| T |
42895518 |
cagtccatttcagaaaccctaattaagagaatcacgctacaatcgtggtattgttccattttaaaaaccctaattaagatgaactccaacacccaaataa |
42895617 |
T |
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| Q |
334 |
cagaact-tcacattatcatcaacaagt |
360 |
Q |
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| T |
42895618 |
cagaactcccacattaccatcagcaagt |
42895645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 42895433 - 42895489
Alignment:
| Q |
72 |
aaaaccctaattatgaaaatcacaccattgcctcacctttcttttgcaaaccctaat |
128 |
Q |
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| T |
42895433 |
aaaaccctaattatgacaatcacgccattgcctcacctttcttttgcaaaccctaat |
42895489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 38897773 - 38897830
Alignment:
| Q |
303 |
ctaattaagatgaattccaacacccactaaacagaacttcacattatcatcaacaagt |
360 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |
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| T |
38897773 |
ctaattaagatgaattccaacacccacttaacagaagttcatattatcatcaacaagt |
38897830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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