View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_low_15 (Length: 380)
Name: NF8638_low_15
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 32288997 - 32288642
Alignment:
| Q |
20 |
ttccaaaagaaatcaaaacaaaggtaagcaaagataaactttttcttttcccagccagcaagggaattttctttagcagagtcataaacaaaatataaga |
119 |
Q |
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| T |
32288997 |
ttccaaaagaaatcaaaacaaaggtaagcaaagataaactttttcttttcccagccagcaagggaattttctttagcagagtcataaacaaaatataaga |
32288898 |
T |
|
| Q |
120 |
gaaacaaaactagaattgtatttcttacttgtttctacaattccttataacaaaatcaatcaacccttaaactgaaagagaccattaccacactcacaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32288897 |
gaaacaaaactagaattgtatttcttacttgtttctacaattccttataacaaaatcaatcaacccttaaactgaaagagaccattaccacactcacaca |
32288798 |
T |
|
| Q |
220 |
caatccaacctatatactgttcaagtagtgcagagaaagagatnnnnnnnnntggatagtgggatgaaaggtggggtttcttgtttccactttagttcat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32288797 |
caatccaacctatatactgttcaagtagtgcagagaaagagataaaaaaaaatggatagtgggatgaaaggtggggtttcttgtttccactttagttcat |
32288698 |
T |
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| Q |
320 |
tcattctctctcatcttttctgccactcaactgtagtacagtactagtattatcta |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32288697 |
tcattctctctcatcttttctgccactcaactgtagtacagtactagtattttcta |
32288642 |
T |
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