View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8638_low_2 (Length: 612)

Name: NF8638_low_2
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8638_low_2
NF8638_low_2
[»] chr3 (2 HSPs)
chr3 (255-478)||(7230100-7230323)
chr3 (87-132)||(7229932-7229977)
[»] chr7 (1 HSPs)
chr7 (255-309)||(11033821-11033875)
[»] chr5 (1 HSPs)
chr5 (255-309)||(18668152-18668206)
[»] chr4 (4 HSPs)
chr4 (255-309)||(23439715-23439769)
chr4 (255-309)||(38898968-38899022)
chr4 (87-128)||(38898790-38898831)
chr4 (255-307)||(38898780-38898832)
[»] chr1 (1 HSPs)
chr1 (255-309)||(15076573-15076627)
[»] chr2 (1 HSPs)
chr2 (255-301)||(971382-971428)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 255 - 478
Target Start/End: Original strand, 7230100 - 7230323
Alignment:
Q  255 taagaaaaatcaaattttgattacaaattcgaaaacaatgatcaaaagggtgattgaaacttacgagatcatatctgataggttcagattgtggaacgat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7230100 taagaaaaatcaaattttgattacaaattcgaaaacaatgatcaaaagggtgattgaaacttacaagatcatatctgataggttcagattgtggaacgat 7230199  T
Q  355 ccaattctgataatctgtaggttgggaggtgtaaatggaaacaggaggtgcaaaagatgttgaatttgcaagtgggtcagtgccaggaggatgaagtgaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7230200 ccaattctgataatctgtaggttgggaggtgtaaatggaaacaggaggtgcaaaagatgttgaatttgcaagtgggtcagtgccaggaggatgaagtgaa 7230299  T
Q  455 ggatcaggaaatgatgaatagtag 478  Q
    ||||||||||||||||||||||||    
T  7230300 ggatcaggaaatgatgaatagtag 7230323  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 7229932 - 7229977
Alignment:
Q  87 cagattttgatcacaaatttgaaaactaagatcaaaagggtgggtg 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7229932 cagattttgatcacaaatttgaaaactaagatcaaaagggtgggtg 7229977  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 11033875 - 11033821
Alignment:
Q  255 taagaaaaatcaaattttgattacaaattcgaaaacaatgatcaaaagggtgatt 309  Q
    |||| |||||||||||||||||||||| | |||||||||||||||||||||||||    
T  11033875 taagcaaaatcaaattttgattacaaaattgaaaacaatgatcaaaagggtgatt 11033821  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 18668152 - 18668206
Alignment:
Q  255 taagaaaaatcaaattttgattacaaattcgaaaacaatgatcaaaagggtgatt 309  Q
    |||| |||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  18668152 taagcaaaatcaaattttgattacaaaattgaaaacaatgaccaaaagggtgatt 18668206  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 23439715 - 23439769
Alignment:
Q  255 taagaaaaatcaaattttgattacaaattcgaaaacaatgatcaaaagggtgatt 309  Q
    |||| |||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  23439715 taagcaaaatcaaattttgattacaaaattgaaaacaatgatcaaaaggctgatt 23439769  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 38898968 - 38899022
Alignment:
Q  255 taagaaaaatcaaattttgattacaaattcgaaaacaatgatcaaaagggtgatt 309  Q
    |||| |||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  38898968 taagcaaaatcaaattttgattacaaaattgaaaacagtgatcaaaagggtgatt 38899022  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 38898790 - 38898831
Alignment:
Q  87 cagattttgatcacaaatttgaaaactaagatcaaaagggtg 128  Q
    ||||||||||  |||||||||||||||||||| |||||||||    
T  38898790 cagattttgaatacaaatttgaaaactaagatgaaaagggtg 38898831  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 38898780 - 38898832
Alignment:
Q  255 taagaaaaatcaaattttgattacaaattcgaaaacaatgatcaaaagggtga 307  Q
    |||||||||||| ||||||| |||||||| |||||| | ||| ||||||||||    
T  38898780 taagaaaaatcagattttgaatacaaatttgaaaactaagatgaaaagggtga 38898832  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 15076627 - 15076573
Alignment:
Q  255 taagaaaaatcaaattttgattacaaattcgaaaacaatgatcaaaagggtgatt 309  Q
    |||| |||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  15076627 taagcaaaatcaaattttgattacaaaattgaaaacaatgaccaaaagggtgatt 15076573  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 971382 - 971428
Alignment:
Q  255 taagaaaaatcaaattttgattacaaattcgaaaacaatgatcaaaa 301  Q
    |||| |||||||||||||||||||||| | |||||||||||||||||    
T  971382 taagcaaaatcaaattttgattacaaaattgaaaacaatgatcaaaa 971428  T

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