View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_low_20 (Length: 298)
Name: NF8638_low_20
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 2091935 - 2091826
Alignment:
| Q |
165 |
agactttgagacaactccaatgaaacccttattatgtggtgaatttcactaacaagtgttgcataaaatattcgtgtaaataaataataagaaacaaagt |
264 |
Q |
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| T |
2091935 |
agactttgagacaactccaatgaaactcttattatgtggtgaatttcactaacaagtgttgcataaaatattagtgtaaataaataataagaaacaaagt |
2091836 |
T |
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| Q |
265 |
caaacaatat |
274 |
Q |
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|||||||||| |
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| T |
2091835 |
caaacaatat |
2091826 |
T |
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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 2092086 - 2091962
Alignment:
| Q |
13 |
agcagagaggagcacattagtacctcggttttaggtgctaccatagcatagacggagaaaggaaaattagaaaaggaaaataaactcaagacctaaaacg |
112 |
Q |
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|||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2092086 |
agcagagaggagcacattagtatctcggttgtgggtactaccatagcatagacggagaaaggaaaattagaaaaggaaaataaactcaagacctaaaacg |
2091987 |
T |
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| Q |
113 |
agtattataatcatttatatccgtt |
137 |
Q |
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| T |
2091986 |
agcattataatcattcatgtccgtt |
2091962 |
T |
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