View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_low_25 (Length: 239)
Name: NF8638_low_25
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 28435323 - 28435157
Alignment:
| Q |
56 |
aggaaataattcttgtaacaatacgtgaaagatatgaagcttttatagctgccttggagaacacgaagaatttttgcgagatcactttggtggaagtgtt |
155 |
Q |
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| T |
28435323 |
aggaaataattcttgtaacaatacgtgaaagatatgaagcttttatagctgccttggagaacacgaagaatttgtgtgagatcactttggtggaa-tgtt |
28435225 |
T |
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| Q |
156 |
tcatgtattacatgaattagagcaaacaaaaattctgagacatgtaagaactatggaaggtatatatt |
223 |
Q |
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| T |
28435224 |
tcatgtattacatgaattagagcaaacaaaaattttgagacatgtaagaactatggaaggtatatatt |
28435157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28435429 - 28435378
Alignment:
| Q |
1 |
atttgaagcatgcaaatgttgaatatttaatgagaattcgagttacaaagaa |
52 |
Q |
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| T |
28435429 |
atttgaagcatgcaaatgttgaatatttaatgagagtttgagttacaaagaa |
28435378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 53969049 - 53969109
Alignment:
| Q |
59 |
aaataattcttgtaacaatacgtgaaagatatgaagcttttatagctgccttggagaacac |
119 |
Q |
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| T |
53969049 |
aaataatacttgtaacggtacatgaaagatgtgacgcttttatagctgtcttggagaacac |
53969109 |
T |
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