View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8638_low_3 (Length: 590)

Name: NF8638_low_3
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8638_low_3
NF8638_low_3
[»] chr7 (2 HSPs)
chr7 (260-577)||(4488186-4488503)
chr7 (18-174)||(4487943-4488099)
[»] chr3 (3 HSPs)
chr3 (358-577)||(1409606-1409825)
chr3 (260-319)||(1409549-1409608)
chr3 (422-486)||(1402810-1402874)
[»] chr5 (3 HSPs)
chr5 (18-174)||(19023544-19023701)
chr5 (260-384)||(19023787-19023911)
chr5 (409-482)||(11955361-11955434)
[»] chr4 (2 HSPs)
chr4 (81-174)||(14244700-14244793)
chr4 (260-319)||(14244855-14244914)
[»] chr2 (2 HSPs)
chr2 (81-174)||(6355250-6355343)
chr2 (260-319)||(6355405-6355464)
[»] chr1 (1 HSPs)
chr1 (383-482)||(40682223-40682322)
[»] chr8 (4 HSPs)
chr8 (81-127)||(6624755-6624801)
chr8 (81-127)||(6790986-6791032)
chr8 (81-127)||(6597226-6597272)
chr8 (18-58)||(22621754-22621794)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 260 - 577
Target Start/End: Original strand, 4488186 - 4488503
Alignment:
Q  260 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 359  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488186 tatttgaggaagaatccagtttgattttagcactattggtgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 4488285  T
Q  360 taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgatt 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4488286 taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcatcacttcctctgccactgcagatgccacatcatctgatt 4488385  T
Q  460 caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488386 caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat 4488485  T
Q  560 atcttacctttctctgct 577  Q
    ||||||||||||||||||    
T  4488486 atcttacctttctctgct 4488503  T

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Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 4487943 - 4488099
Alignment:
Q  18 acttacaacaaaagctaactaacacacacagttataactgcaatactaaaatcaatctatagaaactgcataaattacaattacttaaatataaaatcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4487943 acttacaacaaaagctaactaacacacacagttataactgcaatactaaaatcaatctatagaaactgcataaattacaattacttaaatataaaatcaa 4488042  T
Q  118 tctatagaaaacaatcaaataattgagtgtaaacagaaaacgaaccagcagagatct 174  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4488043 tctataaaaaacaatcaaataattgagcgtaaacagaaaacgaaccagcagagatct 4488099  T

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Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 358 - 577
Target Start/End: Original strand, 1409606 - 1409825
Alignment:
Q  358 agtaccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctga 457  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  1409606 agtaccttttaaataagccaccggttgaagctccaacgaccaatttcgttacagcatacttggttacttcctctgccaccgcagatgccacatcatctga 1409705  T
Q  458 ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaaca 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1409706 ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatcttcatgaagaaca 1409805  T
Q  558 atatcttacctttctctgct 577  Q
    ||||||||||||||||||||    
T  1409806 atatcttacctttctctgct 1409825  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 1409549 - 1409608
Alignment:
Q  260 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 319  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  1409549 tatttgaggaagaatgcagtttgatcttagaactattggtgataataaatctttattagt 1409608  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 486
Target Start/End: Original strand, 1402810 - 1402874
Alignment:
Q  422 tacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgcacct 486  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||| || |||||||||||||    
T  1402810 tacttcctctgctactgcagttgctacatcatctgattcaatcactactacatctacatgcacct 1402874  T

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Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 19023544 - 19023701
Alignment:
Q  18 acttacaacaaaagctaactaacacacacagttataactgc-aatactaaaatcaatctatagaaactgcataaattacaattacttaaatataaaatca 116  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  19023544 acttacaacaaaagctaactaacacacacagttataactgccaatgctaaaatcaatctatagaaactgcataaattacaattacccaaatataaaatca 19023643  T
Q  117 atctatagaaaacaatcaaataattgagtgtaaacagaaaacgaaccagcagagatct 174  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19023644 atctacagaaaacaatcaaataattgagtgtaaacagaaaatgaaccagcagagatct 19023701  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 260 - 384
Target Start/End: Original strand, 19023787 - 19023911
Alignment:
Q  260 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 359  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19023787 tatttgaggatgaatccagtttgatcttggcactattggtgataataaatcattattagtcaaggtagatgctaaaatgattttgctgtcattatagaag 19023886  T
Q  360 taccttttaaataagccacccattg 384  Q
    |||||||||||||||||||||||||    
T  19023887 taccttttaaataagccacccattg 19023911  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 482
Target Start/End: Original strand, 11955361 - 11955434
Alignment:
Q  409 tagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc 482  Q
    |||||| ||| | |||||||||||| | ||||| ||| ||||||||| |||||||||||| ||  |||||||||    
T  11955361 tagcatccttaactacttcctctgctattgcagttgctacatcatcttattcaatcactaaaatatctacatgc 11955434  T

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Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 14244700 - 14244793
Alignment:
Q  81 aactgcataaattacaattacttaaatataaaatcaatctatagaaaacaatcaaataattgagtgtaaacagaaaacgaaccagcagagatct 174  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14244700 aactgcataaattacaattacccaactataaaatcaatctatagaaaacaatcaaataattgagtgtaaacagaaaactaaccagcagagatct 14244793  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 14244855 - 14244914
Alignment:
Q  260 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 319  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14244855 tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt 14244914  T

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Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 6355250 - 6355343
Alignment:
Q  81 aactgcataaattacaattacttaaatataaaatcaatctatagaaaacaatcaaataattgagtgtaaacagaaaacgaaccagcagagatct 174  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6355250 aactgcataaattacaattacccaactataaaatcaatctatagaaaacaatcaaataattgagtgtaaacagaaaactaaccagcagagatct 6355343  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 6355405 - 6355464
Alignment:
Q  260 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 319  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6355405 tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt 6355464  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 482
Target Start/End: Complemental strand, 40682322 - 40682223
Alignment:
Q  383 tgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc 482  Q
    ||||||||||| ||| | ||| |||||||||| |||   |||||||||||| | ||||  ||| |||||||||||||||||||||| ||| |||||||||    
T  40682322 tgaagctccaaggacaagtttggttatagcatccttagctacttcctctgctattgcaattgctacatcatctgattcaatcactaaaacatctacatgc 40682223  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 6624801 - 6624755
Alignment:
Q  81 aactgcataaattacaattacttaaatataaaatcaatctatagaaa 127  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||||    
T  6624801 aactgtataagttacaattacctaaatataaaatcaatctatagaaa 6624755  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 6791032 - 6790986
Alignment:
Q  81 aactgcataaattacaattacttaaatataaaatcaatctatagaaa 127  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||||    
T  6791032 aactgcataagttacaattacccaaatataaaatcaatctatagaaa 6790986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 6597272 - 6597226
Alignment:
Q  81 aactgcataaattacaattacttaaatataaaatcaatctatagaaa 127  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  6597272 aactgcataagttacaattacccaaatataaaattaatctatagaaa 6597226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 22621754 - 22621794
Alignment:
Q  18 acttacaacaaaagctaactaacacacacagttataactgc 58  Q
    ||||||| |||||| ||||||||||||||| ||||||||||    
T  22621754 acttacaccaaaagttaactaacacacacaattataactgc 22621794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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