View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_low_5 (Length: 502)
Name: NF8638_low_5
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 33589599 - 33589155
Alignment:
| Q |
1 |
atgataccatgactgagaataatcaaccgggtccaaaaacacaaactcgttgttcgggtcgggtggctcaaaatatgtttcaagttgtggtagttcaaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
33589599 |
atgataccatgactgagaataatcaaccgggtccaaaaacacaaactcgttgttcggcacgggtgactcaaaatatgtttcaagttgtggtagttcaaca |
33589500 |
T |
|
| Q |
101 |
atctcaccaagatcatatggagttgaagaagaagaagatgttggcattggagaaggaggcggagcaaccatggaagcggctttggcggctgcggcttgaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
33589499 |
atctcaccaagatcatatggagttgaagaagaagaagatgttggcatcggagaaggaggtggagcaaccatggaagcggctttggcggccgcggcttgaa |
33589400 |
T |
|
| Q |
201 |
tatctcttggcaagttagaagctggttgaggaagtgaagctgaaagttcagggaagttaaggattgccgatgagccttttaaggtaagtgcagccacgtc |
300 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33589399 |
tatctcttggcgagttagaagttggttgaggaagtgaagctgaaagttcagggaagttaaggattgccgatgagccttttaaggtaagtgcagccacgtc |
33589300 |
T |
|
| Q |
301 |
gtgtgcacgcgccgccatttcagccgtagcatacgttccaagccagattcgacttttctttcgtggttcacggatttccgatacccattttccccatgtt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33589299 |
gtgtgcacgcgccgccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggatacccattttccccatgtt |
33589200 |
T |
|
| Q |
401 |
cgcattctaactcctctataaagtgggtgattagggttatcactc |
445 |
Q |
| |
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| T |
33589199 |
cgcattctaactcctctataaagtgggtgattagggttatcactc |
33589155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 149 - 439
Target Start/End: Complemental strand, 33602570 - 33602280
Alignment:
| Q |
149 |
ggagaaggaggcggagcaaccatggaagcggctttggcggctgcggcttgaatatctcttggcaagttagaagctggttgaggaagtgaagctgaaagtt |
248 |
Q |
| |
|
|||| |||||| |||| |||||| || |||||||| | || || ||||||| ||||||||| |||| ||||||||| ||||||| ||||||||||| |
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|
| T |
33602570 |
ggaggaggaggaggaggaaccatagacgcggctttaactgcggcagcttgaacatctcttggagagttggaagctggtcttggaagtgtagctgaaagtt |
33602471 |
T |
|
| Q |
249 |
cagggaagttaaggattgccgatgagccttttaaggtaagtgcagccacgtcgtgtgcacgcgccgccatttcagccgtagcatacgttccaagccagat |
348 |
Q |
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| T |
33602470 |
cggggaagttaaggattgcagatgaaccttttatagtaagtgcagctgcatcgtgtgcacgggctgccatttcagcggttgcgaatgttcctagccagat |
33602371 |
T |
|
| Q |
349 |
tcgacttttctttcgtggttcacggatttccgatacccattttccccatgttcgcattctaactcctctataaagtgggtgattagggtta |
439 |
Q |
| |
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||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||| || |||||||||| ||| || |||| |||| |
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| T |
33602370 |
tcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattcttacacctctataaactggatgcttagtgtta |
33602280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 422
Target Start/End: Original strand, 43289982 - 43290111
Alignment:
| Q |
293 |
gccacgtcgtgtgcacgcgccgccatttcagccgtagcatacgttccaagccagattcgacttttctttcgtggttcacggatttccgatacccattttc |
392 |
Q |
| |
|
|||||||| ||||| || || ||||| || | ||| ||| ||||||| |||||||| ||| | ||||||| ||||| |||||||| ||||||||||||| |
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|
| T |
43289982 |
gccacgtcatgtgctcgtgctgccatctccggcgtggcaaacgttccgagccagatccgattcttctttctcggttcgcggatttcggatacccattttc |
43290081 |
T |
|
| Q |
393 |
cccatgttcgcattctaactcctctataaa |
422 |
Q |
| |
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|||| | ||||||| ||||||||| |||| |
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| T |
43290082 |
cccaagcccgcattcgaactcctctgtaaa |
43290111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 407
Target Start/End: Original strand, 43561834 - 43561927
Alignment:
| Q |
314 |
gccatttcagccgtagcatacgttccaagccagattcgacttttctttcgtggttcacggatttccgatacccattttccccatgttcgcattc |
407 |
Q |
| |
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|||||||||| ||||| || ||||||||||||||||| ||| || || ||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
43561834 |
gccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttccgatacccattttccccagcttcgcattc |
43561927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 420
Target Start/End: Original strand, 16357844 - 16357950
Alignment:
| Q |
314 |
gccatttcagccgtagcatacgttccaagccagattcgacttttctttcgtggttcacggatttccgatacccattttccccatgttcgcattctaactc |
413 |
Q |
| |
|
||||||||||| |||| || ||||||||||| |||| ||||||| ||| ||||| ||||| ||||||||||||||||||| || |||||| || | |
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| T |
16357844 |
gccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacac |
16357943 |
T |
|
| Q |
414 |
ctctata |
420 |
Q |
| |
|
||||||| |
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|
| T |
16357944 |
ctctata |
16357950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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