View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_low_6 (Length: 496)
Name: NF8638_low_6
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Complemental strand, 45635193 - 45634727
Alignment:
| Q |
20 |
atcccctcgctatctcatcgatcaaatggcattctctaatattgctatggttttgtgcttctttttagcaatcataatggcactgccaacccttgcaacc |
119 |
Q |
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| T |
45635193 |
atcccctcgctatctcatc----aaatggcattctctaatattgctatggttttgtgcttctttttagcaatcaacatggcactgccaacccttgcaacc |
45635098 |
T |
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| Q |
120 |
ttctacactgtgggagattctttgggctggcaaatcggtgttgaatatagcacatggacgagtgacaaaacctttgtagtcggtgatagccttggtaagt |
219 |
Q |
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| T |
45635097 |
ttctacactgtgggagattctttgggctggcaaatcggtgttgaatatagcaaatggacgagtgaaaaaacctttgtagtcggtgatagccttggtaagt |
45634998 |
T |
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| Q |
220 |
gggaactagaatcctttc----tatttcatttcaaacacaactcaatgcttgctttt--tctccataatgagatgagaacaaagatataaaatt-tcata |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | |
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| T |
45634997 |
gggaactagaatcctttctatatatttcatttcaaacacaactcaatgcttgctttttctctccataatgagatgagaacaaagatataaaattatc--a |
45634900 |
T |
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| Q |
313 |
atttcttacattaatattattaatatgacagtgtttctctatggggctatacacactgtggatgaagttgcagcaagtgattacatctcctgcaccactg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45634899 |
atttcttacattaatattattaatatgacagtgtttctctatggggctatacacactgtggatgaagttgcagcaagtgactacatctcctgcaccactg |
45634800 |
T |
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| Q |
413 |
gaaatccaattagttcagacaatagtggtgagacaaccatagctcttaagactgcaggaactcattatttcat |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45634799 |
gaaatccaattagttcagacaatagtggtgagacaaccatagctcttaagactgcaggaactcattatttcat |
45634727 |
T |
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