View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_low_7 (Length: 468)
Name: NF8638_low_7
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 250 - 459
Target Start/End: Original strand, 30275321 - 30275533
Alignment:
| Q |
250 |
aagtgactcaggtaacttgaatctagaactatcttgctccattgcacttgtttcataagttagaactctttcaagcatgataatatactcattaaaggga |
349 |
Q |
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| T |
30275321 |
aagtgactcaggtaacttgattctagaactatcttgctccgttgcacttgtttcataagtaagggctctttcaagtatgataatatactcattaaagaga |
30275420 |
T |
|
| Q |
350 |
ttcttgagtccactaatgactaaattt-ccatttcaagttcaactaatggagaaatgtcttctgcaatggcctgattattgtcaatcaa--atatgttat |
446 |
Q |
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||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30275421 |
ttcttgagtccgctaataactaaatttcccatttcaagttcaactaatggagaaatgtcttctgcaatggcctgattattgtcaatcaaatatatgttat |
30275520 |
T |
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| Q |
447 |
gtactagtattat |
459 |
Q |
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|| |||||||||| |
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| T |
30275521 |
gtcctagtattat |
30275533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 30275162 - 30275284
Alignment:
| Q |
127 |
ctcttcaataaacatcagaaaaacatcaagttcatgatgcttaagaccaactgagtggttctccaccaattgtgaatacatgataaagatatctttgacc |
226 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
30275162 |
ctcttcaataaacatcagaaaaacatcgagttcatgatgcttaaaaccaactgagtggttctccaccaattgtgaatccatgctgaagatatctttgacc |
30275261 |
T |
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| Q |
227 |
atagtagagagaaactgcaccaa |
249 |
Q |
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|| |||||||||||||||||||| |
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| T |
30275262 |
atggtagagagaaactgcaccaa |
30275284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 315 - 459
Target Start/End: Original strand, 7778696 - 7778844
Alignment:
| Q |
315 |
ctctttcaagcatgataatatactcatta---aagggattc-ttgagtccactaatgactaaatttccatttcaagttcaactaatggagaaatgtcttc |
410 |
Q |
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|||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778696 |
ctctttcaagtatgataatatactcattattaaagagattccttgagtccactaatgactaaatttccatttcaagttcaactaatggagaaatgtcttc |
7778795 |
T |
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| Q |
411 |
tgcaatggcctgattattgtcaatcaaatatgttatgtactagtattat |
459 |
Q |
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| T |
7778796 |
tgcaacggcctgattattgtcaatcaaatatgttatgtactagtattat |
7778844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 37751841 - 37751787
Alignment:
| Q |
55 |
aatacatgaacatgtcacagtagtagaaatagaaaataaaagcactactgtcataacc |
112 |
Q |
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| T |
37751841 |
aatacatgaacatgtcacaggag---aaatagaaaataaaagcacaactgtcataacc |
37751787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 7779491 - 7779525
Alignment:
| Q |
78 |
tagaaatagaaaataaaagcactactgtcataacc |
112 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
7779491 |
tagaaatagaaaataaaagcactactgtcataacc |
7779525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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