View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8638_low_9 (Length: 438)
Name: NF8638_low_9
Description: NF8638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8638_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 44309219 - 44308809
Alignment:
| Q |
16 |
ataggatcccaattctcaatcaaataaaaacataagctaaacactgcagagtggtacaatttctctgtttagggtaaacatatattcacgaaaataataa |
115 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44309219 |
ataggatcccaattctcaatcaaatacaa-cataagctaaacactgcagattggtacaatttctctgtttagggtaaacatatattcacgaaaataataa |
44309121 |
T |
|
| Q |
116 |
caagtaatgactctcaataatgannnnnnnnnnnnnnnncatgaagacagtttataaaatcaagtttttgtttgatgatcttaagataattagacttgat |
215 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44309120 |
caagtaatgactctcaataatgattttgttttttgttttcatgaagacagtttataaaatcaagtttttgtttgatgatcttaagataattagacttgat |
44309021 |
T |
|
| Q |
216 |
gtgtacacttaatatttgatagttctgtagttgaatagaaaataagaattaaagagcacgttttatattggcatcaattttcatcagtctgtcaagcaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
44309020 |
gtgtacacttaatatttgatagttctgtagttgaatagaaaataagaattaaagagcaagttttatattggcatcaattttcatcagcctgtcaagcaaa |
44308921 |
T |
|
| Q |
316 |
ctaaccatataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44308920 |
ctaaccatataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaa |
44308821 |
T |
|
| Q |
416 |
tattaagaataa |
427 |
Q |
| |
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|||||||||||| |
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| T |
44308820 |
tattaagaataa |
44308809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 222 - 425
Target Start/End: Original strand, 44458130 - 44458334
Alignment:
| Q |
222 |
acttaatatttgatagttctgtagttgaatagaaaataagaattaaagagcacgtttt-atattggcatcaattttcatcagtctgtcaagcaaactaac |
320 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
44458130 |
acttcatatttgatagttctgcagttgaatagaaaatgagaattaaagagcaagtttttatattggcatcaattctcatcagcctgtcaagcaaactaac |
44458229 |
T |
|
| Q |
321 |
catataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatatta |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44458230 |
catataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatatta |
44458329 |
T |
|
| Q |
421 |
agaat |
425 |
Q |
| |
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||||| |
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|
| T |
44458330 |
agaat |
44458334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 222 - 425
Target Start/End: Original strand, 44465663 - 44465867
Alignment:
| Q |
222 |
acttaatatttgatagttctgtagttgaatagaaaataagaattaaagagcacgtttt-atattggcatcaattttcatcagtctgtcaagcaaactaac |
320 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
44465663 |
acttcatatttgatagttctgcagttgaatagaaaatgagaattaaagagcaagtttttatattggcatcaattctcatcagcctgtcaagcaaactaac |
44465762 |
T |
|
| Q |
321 |
catataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatatta |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465763 |
catataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatatta |
44465862 |
T |
|
| Q |
421 |
agaat |
425 |
Q |
| |
|
||||| |
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|
| T |
44465863 |
agaat |
44465867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 235 - 425
Target Start/End: Original strand, 27466739 - 27466930
Alignment:
| Q |
235 |
tagttctgtagttgaatagaaaataagaattaaagagcacgttttatattggcatcaattttcatcagtctgtcaagcaaacta------accatatacc |
328 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||| |
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| T |
27466739 |
tagttctgtagttgaatagaaaatgacaattaaagagcacattttatattggcatcaattttcatcaacccgtcaagcaaactaaccattaccatatacc |
27466838 |
T |
|
| Q |
329 |
aaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaat |
425 |
Q |
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||||||||||| ||||||| |||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||| |
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| T |
27466839 |
aaagaattctagaagcata-acttatgcatttcacaaattttacatgagaaatcaaaactttcgca----taatctcaatccctaaatataaagaat |
27466930 |
T |
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