View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_high_13 (Length: 229)
Name: NF8639_high_13
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_high_13 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6061649 - 6061877
Alignment:
| Q |
1 |
tgatcgtctgtcagagaaggataggaagaaagatgttcctcacccacgcatgcaatatgatgataagagcagagtggagaaagctaaacgccgtgctgtg |
100 |
Q |
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| T |
6061649 |
tgatcgtccgtcagagaaggataggaagaaagatgttcctcacccacgcatgcaatatgatgataagagcagagtggagaaagctaaacgccgtgctgtg |
6061748 |
T |
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| Q |
101 |
gtaaaccacactgaatccaggaacagagttgaactattcagacatttgccacagtatgaacatgggagtcagcttcctgatcttgaagcgaagtttttcc |
200 |
Q |
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| T |
6061749 |
gtaaaccacactgaatccaggaacagagttgaactattcagacatttgccacagtatgaacatgggagtcagcttcctgatcttgaagcgaagtttttcc |
6061848 |
T |
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| Q |
201 |
agcttgaacctgtgcatccttcagtttat |
229 |
Q |
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| T |
6061849 |
agcttgaacctgtgcatccttcagtttat |
6061877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 6745076 - 6745288
Alignment:
| Q |
17 |
aaggataggaagaaagatgttcctcacccacgcatgcaatatgatgataagagcagagtggagaaagctaaacgccgtgctgtggtaaaccacactgaat |
116 |
Q |
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|||||||| ||||||||||| ||||| |||||| |||| |||||||| |||||| ||||||||||||||||||| ||| ||||||| || || ||||| |
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| T |
6745076 |
aaggatagaaagaaagatgtccctcaaccacgcttgcagtatgatgacaagagccgagtggagaaagctaaacgtcgttctgtggtgaaacaaactgagg |
6745175 |
T |
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| Q |
117 |
ccaggaacagagttgaactattcagacatttgccacagtatgaacatgggagtcagcttcctgatcttgaagcgaagtttttccagcttgaacctgtgca |
216 |
Q |
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| T |
6745176 |
ctaggaacagagttgagttgttcaggcatttaccacaatatgaacatgggagtcagcttccagatcttgaggcaaagtttttcgacctttatcctatgca |
6745275 |
T |
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| Q |
217 |
tccttcagtttat |
229 |
Q |
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| T |
6745276 |
tcctgctgtttat |
6745288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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