View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_high_5 (Length: 304)
Name: NF8639_high_5
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 4 - 288
Target Start/End: Original strand, 23742427 - 23742711
Alignment:
| Q |
4 |
gaaagaaagtaaattagttgaaacttgttcaatagtgctagagatagagccaaactaaagaaaattatgagttgtgtatgtatgacttaaaagtgattat |
103 |
Q |
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| T |
23742427 |
gaaagaaagtaaattagttgaaactagttcaatagtgctagagatagagccaaactaaagaaaattatgagttgtgtatgtatgacttaaaagtgattat |
23742526 |
T |
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| Q |
104 |
aataaaaattgaaatatttttcaagtttaatcgattataatttattgacagtgtnnnnnnnttacaccgacaaagtgtatgaattgaaccaaaaaatgat |
203 |
Q |
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| T |
23742527 |
aataaaaattgaaatatttttcaagtttaatcgattataatttattgacagtgtaaaaaaattacaccgacaaagtgtatgaattgaaccaaaaaatgat |
23742626 |
T |
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| Q |
204 |
aggacaagccattgaatagtgatttagaggacaatactataactttaatctaactagttacaaccaacaagatttcactacatat |
288 |
Q |
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| T |
23742627 |
aggacaaaccattgaatagtgatttagaggacaatactataactttaatctaactagttacaactaacaagatttcactacatat |
23742711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 23691054 - 23690985
Alignment:
| Q |
181 |
tatgaattgaaccaaaaaatgataggacaagccattgaatagtgatttagaggacaatactataacttta |
250 |
Q |
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| T |
23691054 |
tatgaaatgaaccaaaaaaatataggacaaaccattgaatagtgatttagtgaacaatactataacttta |
23690985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 23688156 - 23688095
Alignment:
| Q |
5 |
aaagaaagtaaattagttgaaacttgttcaatagtgctagagatagagccaaactaaagaaa |
66 |
Q |
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| T |
23688156 |
aaagaaagtaaattaattgaaacaagttcaatagtgatagagaaagagccaaactaaagaaa |
23688095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 23691252 - 23691195
Alignment:
| Q |
5 |
aaagaaagtaaattagttgaaacttgttcaatagtgctagagatagagccaaactaaa |
62 |
Q |
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|||||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||| |
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| T |
23691252 |
aaagaaagtaaattagctgaaactagttcaatagtgttagagatggagccaaactaaa |
23691195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 8083188 - 8083454
Alignment:
| Q |
10 |
aagtaaattagttgaaacttgttcaatagtgctagagatagagccaaactaaagaaaattatgagttgtgtatgtatgacttaaaagtgattataataaa |
109 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||| || |
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| T |
8083188 |
aagtaaattagttgaaactagttcaatggtgctagagatagagccggactaaaaaaaattatgagttgtgta---atgacttaaaagtggttataatgaa |
8083284 |
T |
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| Q |
110 |
aattgaaatatttttcaagtttaatcgattataatttattgacagtgt-nnnnnnnttacaccgacaaagtgtatgaattgaaccaaaaaatgataggac |
208 |
Q |
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| T |
8083285 |
aaattaaatatttttaaagatttaacaattataatttatcgacagcataaaaaaaattacaccgagaaagtatatgaattgaaccaaaaaatgat----- |
8083379 |
T |
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| Q |
209 |
aagccattgaatagtgatttagaggacaatactataactttaatctaactagttacaaccaacaagatttcactacatat |
288 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
8083380 |
-----attgaatgttgatttagaggacaatgctataactttaatctaactaattacaactgacaagatttcactacatat |
8083454 |
T |
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