View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_high_6 (Length: 254)
Name: NF8639_high_6
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 4098254 - 4098090
Alignment:
| Q |
18 |
atttttacactttatagcaatagatttaaagacattcaaacaaaaaatagtttagcaccctctaaaattaaaatgaatgctattgtataaagggtatata |
117 |
Q |
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| T |
4098254 |
atttttacactttatagcaatagatttaaagacattcaaacaaaaaatagtttagcaccctctaaaattaaaatgaatgctattgtataaagggtatata |
4098155 |
T |
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| Q |
118 |
taaagtgaaccaatttgtaacaatcaatctttgttcctagacacatcgatttacaatcattaagt |
182 |
Q |
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| T |
4098154 |
aaaagtgaaccaatttgtaacaattaatctttgttcctagacacatcgatttacaatcattaagt |
4098090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 4098046 - 4097980
Alignment:
| Q |
180 |
agtttacaatcttgtgcagacatgtgaatgcaggtattacgagatatataattcatattttcatctc |
246 |
Q |
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| T |
4098046 |
agtttacaattttgtgcagacatgtgaatgcaggtattacgagatatataattcatattttcatctc |
4097980 |
T |
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