View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8639_high_8 (Length: 244)

Name: NF8639_high_8
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8639_high_8
NF8639_high_8
[»] chr2 (6 HSPs)
chr2 (70-181)||(6563111-6563222)
chr2 (1-65)||(6562767-6562831)
chr2 (73-152)||(223892-223973)
chr2 (63-127)||(36903987-36904051)
chr2 (63-127)||(4428804-4428868)
chr2 (63-152)||(9047601-9047692)
[»] chr8 (3 HSPs)
chr8 (63-127)||(7642624-7642688)
chr8 (63-127)||(38573316-38573380)
chr8 (63-127)||(23518224-23518288)
[»] chr4 (9 HSPs)
chr4 (63-127)||(25231534-25231598)
chr4 (63-127)||(31861579-31861643)
chr4 (63-127)||(35808715-35808779)
chr4 (63-126)||(3121083-3121146)
chr4 (73-128)||(9093608-9093663)
chr4 (73-127)||(37624862-37624916)
chr4 (63-116)||(24504700-24504753)
chr4 (63-127)||(16958390-16958454)
chr4 (63-127)||(43595003-43595067)
[»] chr3 (3 HSPs)
chr3 (70-127)||(53466257-53466314)
chr3 (63-152)||(8108237-8108327)
chr3 (63-152)||(45249361-45249452)
[»] chr7 (10 HSPs)
chr7 (73-153)||(48488419-48488501)
chr7 (63-153)||(28646615-28646707)
chr7 (63-127)||(23247756-23247820)
chr7 (63-127)||(28514663-28514727)
chr7 (63-127)||(37869747-37869811)
chr7 (63-128)||(19086330-19086395)
chr7 (63-127)||(10624971-10625035)
chr7 (63-127)||(45618475-45618539)
chr7 (64-127)||(34503153-34503216)
chr7 (63-127)||(31191397-31191461)
[»] chr6 (1 HSPs)
chr6 (63-152)||(32147870-32147961)
[»] chr1 (3 HSPs)
chr1 (70-127)||(13984272-13984329)
chr1 (63-127)||(5892694-5892758)
chr1 (63-127)||(36563876-36563940)
[»] chr5 (3 HSPs)
chr5 (77-127)||(10285009-10285059)
chr5 (63-153)||(34338930-34339022)
chr5 (70-114)||(14663012-14663056)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 6563111 - 6563222
Alignment:
Q  70 ttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaagttagttttatatgcttaaacaataagcacattgttaatag 169  Q
    |||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| |     
T  6563111 ttaaaaatataaatcaaacacttattgaaattataaccgcacaatttacaatacaaaaagttacttttatatgcttaaacaataaggacattgttaacat 6563210  T
Q  170 tttcccatgacc 181  Q
    ||| ||||||||    
T  6563211 ttttccatgacc 6563222  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6562767 - 6562831
Alignment:
Q  1 ttttaaaatttagatacaatgaagaactattagatcatcttcaatggaaggatcttaaacattta 65  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6562767 ttttaaaatttggatacaatgaagaactattagatcatcttcaatggaagggtcttaaacattta 6562831  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 223973 - 223892
Alignment:
Q  73 aaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaa--gttagttttatatgcttaaacaat 152  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||  | || ||||| |||||||||||||    
T  223973 aaaatataagtcaaacacttattgaagttataaccgtacaattttcaatgcaaaaattgctacttttagatgcttaaacaat 223892  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 36903987 - 36904051
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||| |||||| |||||||| ||||||| || | ||||||||||||||| ||||||||||    
T  36903987 ttatgtcttgaaaatacaagtcaaacacttattaaagtcataaccgtacaatttccaatgcaaaa 36904051  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 4428804 - 4428868
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||| || |||||||||||||| ||||| || | ||||||||| ||||| ||||| ||||    
T  4428804 ttatgtcttgaagatataagtcaaatatttattaaagtcataaccgtataattttcaatgtaaaa 4428868  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 9047692 - 9047601
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaat 152  Q
    |||||| || |||||| |||||||| |||| || || | ||||||||||||||| ||||| ||||   |||| ||||||||| |||||||||    
T  9047692 ttatgttttgaaaatacaagtcaaacacttgttaaagtcataaccgtacaattttcaatgtaaaagttgttacttttatatgattaaacaat 9047601  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 7642624 - 7642688
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    |||||| || ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  7642624 ttatgttttgaaaatataagtcaaacacttgttgaagttataaccgtacaatttacaatgcaaaa 7642688  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 38573316 - 38573380
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||| ||| ||||||||||||||| | || ||||| ||||||||||||||||| ||||||||||    
T  38573316 ttatgccttgaaaatataagtcaaacatttgttgaagttataaccgtacaatttccaatgcaaaa 38573380  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 23518224 - 23518288
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    |||| |||||||||||||| ||||||| ||||| || |   ||||||||||||| ||||||||||    
T  23518224 ttatatcttaaaaatataaatcaaatatttattaaagtctgaaccgtacaattttcaatgcaaaa 23518288  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 25231598 - 25231534
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||    
T  25231598 ttatgtcttgaaaatataagtcaaatatttgttgaagttataaccgtacaatttccaatgcaaaa 25231534  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 31861643 - 31861579
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||| ||||||||||||||| |||| || |||||||||||| ||||||| ||||||||||    
T  31861643 ttatgtcttgaaaatataagtcaaacacttgttaaaattataaccggacaatttccaatgcaaaa 31861579  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 35808715 - 35808779
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    |||| |||| ||||||||||||||| |||  ||||| ||||||||||||||||| ||||||||||    
T  35808715 ttatatcttgaaaatataagtcaaacactagttgaagttataaccgtacaattttcaatgcaaaa 35808779  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 3121083 - 3121146
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaa 126  Q
    ||||||||| ||||||||||||||  | || ||||| ||||||||||||||||| |||||||||    
T  3121083 ttatgtcttgaaaatataagtcaatcatttgttgaagttataaccgtacaattttcaatgcaaa 3121146  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 9093663 - 9093608
Alignment:
Q  73 aaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaa 128  Q
    ||||||||||||||| |||| || || ||||||||||||||||| |||||||||||    
T  9093663 aaaatataagtcaaacacttgtttaagttataaccgtacaattttcaatgcaaaaa 9093608  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 37624862 - 37624916
Alignment:
Q  73 aaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||||||||| |||| || || ||||||||||||||||| ||||||||||    
T  37624862 aaaatataagtcaaacacttgttaaagttataaccgtacaattttcaatgcaaaa 37624916  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 24504700 - 24504753
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaattt 116  Q
    |||| |||| |||||||| |||||||||||||| || |||||||||||||||||    
T  24504700 ttatatctttaaaatatatgtcaaatacttattaaagttataaccgtacaattt 24504753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 16958454 - 16958390
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||| ||||||||||||||| |||| ||||| |||||| ||| |||||| ||||| ||||    
T  16958454 ttatgtcttgaaaatataagtcaaacacttgttgaagttataaacgtgcaatttccaatgtaaaa 16958390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 43595003 - 43595067
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||| ||||| ||||| |||  ||| ||||| ||||||||||||||||| |||| |||||    
T  43595003 ttatgtcttgaaaatgtaagttaaacccttcttgaagttataaccgtacaattttcaatacaaaa 43595067  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 53466314 - 53466257
Alignment:
Q  70 ttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    |||||||||||||||||| |||||||||| |||||| |||||||||| ||||||||||    
T  53466314 ttaaaaatataagtcaaacacttattgaagttataatcgtacaattttcaatgcaaaa 53466257  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 8108237 - 8108327
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaat 152  Q
    ||||| ||| ||||||||||||||  |||| ||||| ||||||||||||||||| ||||||||||   |||| ||||| |||||||||||||    
T  8108237 ttatgccttgaaaatataagtcaac-acttgttgaagttataaccgtacaatttccaatgcaaaagttgttacttttagatgcttaaacaat 8108327  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 45249452 - 45249361
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaat 152  Q
    ||||||||| |||||| |||||||| | || || || | ||||||||||||||| ||||||||||   | || |||||||||||||||||||    
T  45249452 ttatgtcttgaaaatacaagtcaaacatttgttaaagtcataaccgtacaatttccaatgcaaaagttgctacttttatatgcttaaacaat 45249361  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 48488501 - 48488419
Alignment:
Q  73 aaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaata 153  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||   | || ||||| ||||||||||||||    
T  48488501 aaaatataagtcaaacacttgttgaagttataaccgtacaatttccaatgcaaaagttgctacttttagatgcttaaacaata 48488419  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 28646707 - 28646615
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaata 153  Q
    ||||||||||||||||||||||||| | || || || | ||||||||||||||| ||||| ||||   | || ||||||||||||||||||||    
T  28646707 ttatgtcttaaaaatataagtcaaaaatttgttaaagtcataaccgtacaatttccaatgtaaaagttgctacttttatatgcttaaacaata 28646615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 23247820 - 23247756
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||| ||| ||||||||||||||| |||| ||||| |||||||||| |||||| ||||||||||    
T  23247820 ttatgccttgaaaatataagtcaaacacttgttgaagttataaccgttcaatttccaatgcaaaa 23247756  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 28514663 - 28514727
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||| ||| ||||||||||||||| |||| || || ||||||||||||||||| ||||||||||    
T  28514663 ttatgccttgaaaatataagtcaaacacttgttcaagttataaccgtacaatttccaatgcaaaa 28514727  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 37869811 - 37869747
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    |||||| |||||||||||||||||| |||| || || | ||||||||||||||| ||||||||||    
T  37869811 ttatgttttaaaaatataagtcaaacacttgttaaagtcataaccgtacaattttcaatgcaaaa 37869747  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 19086330 - 19086395
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaa 128  Q
    ||||| ||| ||||||||||||||| |||| ||||| |||| |||||||||||| ||| |||||||    
T  19086330 ttatgccttgaaaatataagtcaaacacttgttgaagttattaccgtacaatttccaaagcaaaaa 19086395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 10624971 - 10625035
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||| |||||| |||||||| |||||||  | | ||||||||||||||| ||||||||||    
T  10624971 ttatgtcttgaaaatacaagtcaaacacttattatagtcataaccgtacaattttcaatgcaaaa 10625035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 45618539 - 45618475
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||| ||||||||||||||||| ||||| || | | ||| ||||||||| ||||||||||    
T  45618539 ttatgtcttgaaaatataagtcaaatatttattaaagtcacaacggtacaattttcaatgcaaaa 45618475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 34503153 - 34503216
Alignment:
Q  64 tatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    |||||||| ||||||||| ||||| |||| ||||||||||||  ||||||||| |||| |||||    
T  34503153 tatgtcttgaaaatataaatcaaacacttgttgaaattataatagtacaattttcaattcaaaa 34503216  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 31191397 - 31191461
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||| ||| ||||||||||||||| |||| || || |||||||||| |||||| ||||| ||||    
T  31191397 ttatgccttgaaaatataagtcaaacacttgttaaagttataaccgtgcaatttccaatgtaaaa 31191461  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 32147961 - 32147870
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaagt--tagttttatatgcttaaacaat 152  Q
    |||||| || |||||| || ||||||| ||||| || | ||||||||||||||| ||||||||||| |  || |||||||||||||||||||    
T  32147961 ttatgttttgaaaatacaaatcaaatatttattaaagtcataaccgtacaatttgcaatgcaaaaattactacttttatatgcttaaacaat 32147870  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 13984329 - 13984272
Alignment:
Q  70 ttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    |||||||||||||||||| | |||||||| |||||||||||| |||| ||||| ||||    
T  13984329 ttaaaaatataagtcaaacatttattgaagttataaccgtacgatttccaatgtaaaa 13984272  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 5892758 - 5892694
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    |||| ||||||||||| |||||||| ||||||| || | ||||||||| ||||| |||| |||||    
T  5892758 ttatatcttaaaaatacaagtcaaacacttattaaagtcataaccgtataatttccaatccaaaa 5892694  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 36563876 - 36563940
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||| ||| ||||||||||||||| |||| || || ||||| ||||||||||| ||||| ||||    
T  36563876 ttatgccttgaaaatataagtcaaacacttgttaaagttatatccgtacaattttcaatgtaaaa 36563940  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 10285059 - 10285009
Alignment:
Q  77 tataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 127  Q
    ||||||||||||| || ||||| ||||||||||||||||| |||| |||||    
T  10285059 tataagtcaaatatttgttgaagttataaccgtacaatttccaatacaaaa 10285009  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 34338930 - 34339022
Alignment:
Q  63 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaata 153  Q
    ||||| ||| ||||||||||||||| |||| ||||| ||||||||  ||| ||| ||||||||||   | || ||||| ||||||||||||||    
T  34338930 ttatgccttgaaaatataagtcaaacacttgttgaagttataaccacacactttccaatgcaaaagttgctatttttagatgcttaaacaata 34339022  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 14663012 - 14663056
Alignment:
Q  70 ttaaaaatataagtcaaatacttattgaaattataaccgtacaat 114  Q
    |||||||||||||||||| |||| ||||| ||||||||| |||||    
T  14663012 ttaaaaatataagtcaaacacttgttgaagttataaccgcacaat 14663056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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