View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8639_high_9 (Length: 242)
Name: NF8639_high_9
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_high_9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 28274292 - 28274517
Alignment:
| Q |
20 |
cacaattccttaaacatcttgtcctcatcaaaatttcatctttctccacccatcaaatatttcattccccaaaaattctcttattatattgatttctcat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28274292 |
cacaattccttaaacatcttgtcctcatctcaatttcatctttctccacccatcaaatatttcattccccaaaaattctcttattatattgatttctcat |
28274391 |
T |
|
| Q |
120 |
agtcctcttcatcg---aatgtatttatcctatttaacaaatatatttcttaattgaattgaacattgatttgatataatatcgaagtctactatcttat |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28274392 |
agtcctcttcatcgaataatgtatttatcctatttaagaaatatatttcttaattgaattgaacattgatttgatataatatcgaagtctactgtcttat |
28274491 |
T |
|
| Q |
217 |
ctctgcaagttaaagtgtggtgtctt |
242 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
28274492 |
ctctgtaagttaaagtgtggtgtctt |
28274517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University