View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_low_1 (Length: 594)
Name: NF8639_low_1
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 14 - 594
Target Start/End: Original strand, 26038769 - 26039350
Alignment:
| Q |
14 |
atggacatcagttcatctagttaccttgacagaaaattttaaaatagtagaacaggatattatatgctcgaaccatcctagannnnnnn-cttatttcat |
112 |
Q |
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| T |
26038769 |
atggacatcagttcatctagttaccttgacagaaaattttaaaatagtagaacaggatattatatgctcgaaccatcctagattttttttcttatttcat |
26038868 |
T |
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| Q |
113 |
caatttcaaacaaattgaaaagaaaatataaaacaatggaaaaggaaggtgaaagttaaacaagcatgcagatccaatgtcatatagggtcttttaagca |
212 |
Q |
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| T |
26038869 |
caatttcaaacaaattgaaaagaaaatataaaacaatagaaaaggaaggtgaaagttaaacaagcatgcagatccaatgtcatatagggtcttttaagca |
26038968 |
T |
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| Q |
213 |
agtggtcataaatttaccttatttttgaacctggtcatagcaaacaagcgttcaatagctggctctccttctctccattcattgtaagcttttcctacat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26038969 |
agtggtcataaatttaccttatttttgaacctggtcatagcaaacaagcgttcgatagctggctctccttctctccattcattgtaagcttttcctacat |
26039068 |
T |
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| Q |
313 |
cctgcgttattctttattttaagattgataaccaaagacagctccacaaaagctgaaccatgataacaatacctgaataggctcaattaagaaaagcaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26039069 |
cctgcgttattctttattttaagattgataaccaaagacagctccacaaaagctgaaccatgataacaatacctgaataggctcaattaagaaaagcaat |
26039168 |
T |
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| Q |
413 |
gaagtcacaaatgaaaccaagctacagcgatcaaatgaacctcttgaaatcacgatcgaacctgcacaaagtatggaaagaactccaaaataaatagcct |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26039169 |
gaagtcacaaatgaaaccaagctacagcgatcaaatgaacctcttgaaatcacgatcgaacctgcgcaaagtatggaaagaactccaaaataaatagcct |
26039268 |
T |
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| Q |
513 |
gaataacctggggaattactgctttcatccnnnnnnngttcagcattgcagagaagtccatcagggccagtctcttgaacct |
594 |
Q |
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| T |
26039269 |
gaataacctggggaattactgctttcatcctttttttgttcagcatcgcagagaagtccatcagggccagtctcttgaacct |
26039350 |
T |
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