View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_low_11 (Length: 242)
Name: NF8639_low_11
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 28274292 - 28274517
Alignment:
| Q |
20 |
cacaattccttaaacatcttgtcctcatcaaaatttcatctttctccacccatcaaatatttcattccccaaaaattctcttattatattgatttctcat |
119 |
Q |
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| T |
28274292 |
cacaattccttaaacatcttgtcctcatctcaatttcatctttctccacccatcaaatatttcattccccaaaaattctcttattatattgatttctcat |
28274391 |
T |
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| Q |
120 |
agtcctcttcatcg---aatgtatttatcctatttaacaaatatatttcttaattgaattgaacattgatttgatataatatcgaagtctactatcttat |
216 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28274392 |
agtcctcttcatcgaataatgtatttatcctatttaagaaatatatttcttaattgaattgaacattgatttgatataatatcgaagtctactgtcttat |
28274491 |
T |
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| Q |
217 |
ctctgcaagttaaagtgtggtgtctt |
242 |
Q |
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||||| |||||||||||||||||||| |
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| T |
28274492 |
ctctgtaagttaaagtgtggtgtctt |
28274517 |
T |
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