View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_low_16 (Length: 228)
Name: NF8639_low_16
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_low_16 |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0048 (3 HSPs) |
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Alignment Details
Target: scaffold0185 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7103 - 7341
Alignment:
| Q |
1 |
agaagtttgagttttatgcaatgtgtttggttctaataagcttagtatttacggtgtttttcaggaaactatttggaatttttctgacttcaatatggat |
100 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||| |
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| T |
7103 |
agaagtttgagttttatgcaatgtggttggttctcataagcttagtatttacggtgtgttttgggaaactatttggaatttttttgacatcaatatggat |
7202 |
T |
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| Q |
101 |
cttccttttctctcttagcaactcaaactatagctgccaaaagatgttgctatatggcccaaaatacatggat-----------gtatagaaagtgaagt |
189 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
7203 |
cttccttttctctctttgcaactcaaactatagctgccaaaagatgttgctatatggtccaaagtacatggatgtaaagggtcggtatagaaagtgaagt |
7302 |
T |
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| Q |
190 |
accataatgagcattattttggacatcccgaacaaagct |
228 |
Q |
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| T |
7303 |
accataatgagcattattttggacttcccgaacaaagct |
7341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 60446 - 60673
Alignment:
| Q |
1 |
agaagtttgagttttatgcaatgtgtttggttctaataagcttagtatttacggtgtttttcaggaaactatttggaatttttctgacttcaatatggat |
100 |
Q |
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|||| ||||||||||||||||| | |||||| || ||||||||||||||||| |||||||| ||||| ||||||| |||||| |||| || |||||||| |
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| T |
60446 |
agaattttgagttttatgcaatttctttggtactcataagcttagtatttactgtgttttttgggaaaatatttggtatttttttgacatcgatatggat |
60545 |
T |
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| Q |
101 |
cttccttttctctcttagcaactcaaactatagctgccaaaagatgttgctatatggcccaaaatacatggatgtatagaaagtgaagtaccataatgag |
200 |
Q |
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| T |
60546 |
cttccttttctctctttggaactcaaactatatctgccaaaagatgttgctatatggcgcaaaatacatggatgtatagaaagtgaagtaccataatgag |
60645 |
T |
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| Q |
201 |
cattattttggacatcccgaacaaagct |
228 |
Q |
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| T |
60646 |
cattattttggacttcccgaacaaagct |
60673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 85392 - 85236
Alignment:
| Q |
1 |
agaagtttgagttttatgcaatgtgtttggttctaataagcttagtatttacggtgtttttcaggaaactatttggaatttttctgacttcaatatggat |
100 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
85392 |
agaagtttgagtttcgtgcaatttgtttggttctaataagcttagtatttactgtgtttttcgggaaactatttggaatttttctgacttcaatatggat |
85293 |
T |
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| Q |
101 |
cttccttttctctcttagcaactcaaactatagctgccaaaagatgttgctatatgg |
157 |
Q |
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|||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||| |
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| T |
85292 |
cttccttttctctctttgcaactcaaactataggtgccgaaagatgttgccatatgg |
85236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 47842 - 48064
Alignment:
| Q |
1 |
agaagtttgagttttatgcaatgtgtttggttctaataagcttagtatttacggtgtttttcaggaaactatttggaatttttctgacttcaatatggat |
100 |
Q |
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|||||||||||||| ||||||| ||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||| ||| | |||||||| | ||| |
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| T |
47842 |
agaagtttgagtttcatgcaatttgtttggttctcataagattagtatttatggtgttttttgggaaactatttggaatattttttacttcaatttcgat |
47941 |
T |
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| Q |
101 |
cttccttttctctcttagcaactcaaactatagctgccaaaagatgttgctatatggcccaaaatacatggat-----------gtatagaaagtgaagt |
189 |
Q |
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|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
47942 |
cttccttttctctctttggaactcaaactatagatgccaaaagatgttgctatatggtccaaagtacatggatgtaaagggtcggtatagaaagtgaagt |
48041 |
T |
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| Q |
190 |
accataatgagcattattttgga |
212 |
Q |
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||||||| ||| ||||||||||| |
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| T |
48042 |
accataacgaggattattttgga |
48064 |
T |
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