View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_low_17 (Length: 228)
Name: NF8639_low_17
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11023857 - 11023648
Alignment:
| Q |
1 |
cattttcagtacttactactttcttctttttgggaatttccaccattagagaagttggtcccacatgccaaaccttccgtccggtgagattctcataata |
100 |
Q |
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| T |
11023857 |
cattttcagtactcactactttcttctttttgggaatttccaccattagagaagttggtcccacatgccaaaccttccgtccggtgagattctcataata |
11023758 |
T |
|
| Q |
101 |
ttctgtgtaaccttcgtcaagttcagcgaagctattaacgatcacgccatgagaatcattttcagcttctataagtgattccgtgagtctggcgaaacct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
11023757 |
ttctgtgtaaccttcgtcaagttcagcgaagctattaacgatcacgccatgagaatcattttcagcttctataagtgattctgtgagtctagcgaaacct |
11023658 |
T |
|
| Q |
201 |
ggtgatggtt |
210 |
Q |
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|||||||||| |
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| T |
11023657 |
ggtgatggtt |
11023648 |
T |
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