View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_low_18 (Length: 224)
Name: NF8639_low_18
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 17898867 - 17898682
Alignment:
| Q |
20 |
tctatggcttaaaggatttaatcgaaaaaattgaaacttgtgatgaatttcatgcaaagatgcagggtccatatctgagacttgatatggcttgaaaaga |
119 |
Q |
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| T |
17898867 |
tctatggcttaaaggatttaatcgaaaaaattgaaacttgtgatgcatttcatgcaaagatgcagggtccatatctgagacttgatatggcttgaaaaga |
17898768 |
T |
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| Q |
120 |
aggtctatctcacctaattattgaaaaagactcgaaagtgcgtattgacatggttaccaaacattgcaagatcaacggaaccaccc |
205 |
Q |
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| T |
17898767 |
aggtctatctcatctaattgttgaaaatgactcgaaagtgtttattgacatggttaccaaacattgcaagatcaatggaaccaccc |
17898682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 209
Target Start/End: Complemental strand, 42161278 - 42161169
Alignment:
| Q |
100 |
cttgatatggcttgaaaagaaggtctatctcacctaattattgaaaaagactcgaaagtgcgtattgacatggttaccaaacattgcaagatcaacggaa |
199 |
Q |
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| T |
42161278 |
cttgatatggcttggagtgagggtttatctcacgtgattgttgagagtgactcaaaagtgcttattgatatggttactaacaattgcaagatcaatggaa |
42161179 |
T |
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| Q |
200 |
ccaccccttc |
209 |
Q |
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| T |
42161178 |
ccatcccttc |
42161169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 43691594 - 43691712
Alignment:
| Q |
91 |
tatctgagacttgatatggcttgaaaagaaggtctatctcacctaattattgaaaaagactcgaaagtgcgtattgacatggttaccaaacattgcaaga |
190 |
Q |
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| T |
43691594 |
tatctgggacttcatatggcttgaagagaaggtctatctcacctaattgttgaaagtgactcgaaagtgtttatagatatggtcaccaaaaattgcaaga |
43691693 |
T |
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| Q |
191 |
tcaacggaaccaccccttc |
209 |
Q |
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| T |
43691694 |
tcaaaggaactaccccttc |
43691712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 20670300 - 20670192
Alignment:
| Q |
101 |
ttgatatggcttgaaaagaaggtctatctcacctaattattgaaaaagactcgaaagtgcgtattgacatggttaccaaacattgcaagatcaacggaac |
200 |
Q |
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| T |
20670300 |
ttgatatggcttggagtgagggtttatctcacgtgattgttgagagtgactcaaaagttcttattgatatggttactaacaattgcaagatcaatggaac |
20670201 |
T |
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| Q |
201 |
caccccttc |
209 |
Q |
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| T |
20670200 |
catcccttc |
20670192 |
T |
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