View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_low_2 (Length: 581)
Name: NF8639_low_2
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 575
Target Start/End: Original strand, 30435771 - 30436318
Alignment:
| Q |
16 |
caaatgtccagaacctaatgttaaaggtattatgcttcatctataaatgatgtctggtttaattaatagcaatagaagcatgagg---tagttaaaggat |
112 |
Q |
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| T |
30435771 |
caaatgtccagaacctaatgttaaaggtattatgcttcatctataaatgatgt--------------agcaatagaagcatgagggggtagttaaag-at |
30435855 |
T |
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| Q |
113 |
agtgcagcttctaatttctcttgttannnnnnnatccttcctttgacaggttttactaaaccaggttgtattgggtccatgtgtcattgccgttatcttt |
212 |
Q |
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| T |
30435856 |
agtgcagcttctaatttctcttgttatttttttatccttcctttgacaggttttactaaaccaggttgtattgggtccatgtgtcattgccgttatcttt |
30435955 |
T |
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| Q |
213 |
gcatggaacaatttatggcaacaaaagctctcagagcttccggaaaaatacaaaagagatgctcttccaactttactttatggtacaaatctcatcgcct |
312 |
Q |
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| T |
30435956 |
gcatggaacaatttatggcaacaaaagctctcagagcttccggaaaaatacaaaagagatgctcttccaactttactttatggtacaaatctaatcgcct |
30436055 |
T |
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| Q |
313 |
aattgttattgtgacttactcttatgcatatttctcatacctttctgtgtgatttgtctgttcaggttttaggttctggatccctgtcagtatattaaat |
412 |
Q |
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| T |
30436056 |
aattgttattgtgacttactcttatgcatatttctcatacctttctgtgtgatttgtctgttcaggttttaggttctggatccctgtcagtgtattaaat |
30436155 |
T |
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| Q |
413 |
ttctggtacgcatgttcatatccttaaatctgatattctacttgtgttttattgcttctgctcttttatcaagttgcaaattgtaacgataaaattaatt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
30436156 |
ttctggtacgcatgttcatatccttaaatctgatattctacttgtgttttttcgcttctgctcttttatcaagttgcaaattgtaatgataaaattagtt |
30436255 |
T |
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| Q |
513 |
catgtccgttttacataaacacgacgataaaaattagttcacgcagtctctaagtataatcta |
575 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30436256 |
catgcccgttttacataaacatgacgataaaaattagttcacgcagtctctaattataatcta |
30436318 |
T |
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