View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_low_3 (Length: 436)
Name: NF8639_low_3
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 26039327 - 26039717
Alignment:
| Q |
19 |
catcagggccagtctcttgaacctgacactctcaagtgactctgcgttgtttgctttcacaaagagatacgcgggcagcatctaattgtttaggagggga |
118 |
Q |
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| T |
26039327 |
catcagggccagtctcttgaacctgacactctcaagtgactctgcgttgtttgctttcacaaagagatacgcgggcagcatctaattgtttaggagggga |
26039426 |
T |
|
| Q |
119 |
aatattgaacacaaggtagataacaagatttgcaaacaatgcaaggcttttaagatttcttcgtaaagtacattgaaggagcgtgagacaatcacggtta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26039427 |
aatattgaacacaaggtagataacaagatttgcaaacaatgcaaggcttttaagatttcttcgtaaagtacattgaaggagcgtgagacaatcacgttta |
26039526 |
T |
|
| Q |
219 |
cctcattcagataagctgagagagcagcaatgctaatatgtgactttttagatgttttgcgaagttcttgaccaagaaaggtaacaactagaaccataca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26039527 |
cctcattcagataagctgagagagcagcaatgctaatatgtgactttttagatattttgcgaagttcttgaccaagaaaggtaacaactagaaccataca |
26039626 |
T |
|
| Q |
319 |
aggaataacctgcaatatgcaaaagcataacgcatgattaaacctagtctttctgaaagaacaatcaagtggtaagaagaaagcataatcctct |
412 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
26039627 |
aggaataacctgcaatatgcaaaagcataacacatgattaaacctagtctttctgaaagaaaaatcaagtggt---aagaaagcataatcctct |
26039717 |
T |
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