View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8639_low_4 (Length: 381)
Name: NF8639_low_4
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 3324753 - 3324920
Alignment:
| Q |
23 |
catagaatatatgaggagaccctattggctaaaaagggaaatgtcttttcttgttgatgttggatattttagaggatatgttggggtaaatta---aata |
119 |
Q |
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| T |
3324753 |
catagaatatatgaggagaccctattggctaaaaagggaaatgtcttttcttgttgatgttggatattttagaggatatgttggggtaaattaaataata |
3324852 |
T |
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| Q |
120 |
tagatgtagtgtatttagaatgattgaacataaagttaaaggtaagaataagtgtatttaggagacct |
187 |
Q |
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| T |
3324853 |
tagatgtagtgtatttagaatgattgaacataaagttaaaggtaagaataagtgtatttaggagacct |
3324920 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 3325021 - 3325084
Alignment:
| Q |
302 |
gtgtccaaatatgttttctcaaaa-cttaagtgttttagttatttcaagtagtttggctcattg |
364 |
Q |
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| T |
3325021 |
gtgtcgaaatatcttttctcaaaaacttaagtgttttagttatttcaagtagtttggctcattg |
3325084 |
T |
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