View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8639_low_7 (Length: 287)
Name: NF8639_low_7
Description: NF8639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8639_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 67 - 261
Target Start/End: Original strand, 3219115 - 3219309
Alignment:
| Q |
67 |
aaaaattattattttattaaaataatgaggtatttagtgaaaaatagtcaaaataatgtgtttgttaattgtgtgtttaataaattgtgcaaatgaggta |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3219115 |
aaaaattattattttattaaaataatgaggtaattagtgaaaaatagtcaaaataatgtgtttgttaattgtgtgattaataaattgtgcaaatgaggta |
3219214 |
T |
|
| Q |
167 |
tttagaaaaaattattattttattaccgactgaaactcattagtggcgctttaaatagggagcgtgagttatatgactcattgtccaattttatt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3219215 |
tttagaaaaaattattattttattaccgactgaaactcattagtggcgctttaaatagggagcgtgggttatatgactcattgtccaattttatt |
3219309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 3219205 - 3219239
Alignment:
| Q |
51 |
aaatgaggtatttaggaaaaattattattttatta |
85 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3219205 |
aaatgaggtatttagaaaaaattattattttatta |
3219239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12677996 - 12677962
Alignment:
| Q |
1 |
ttttcatgaaaaagatcaattgaaagcaaatgcta |
35 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
12677996 |
ttttcatgaaaaagatcaattggaagcaaatgcta |
12677962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University