View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8640_high_2 (Length: 363)
Name: NF8640_high_2
Description: NF8640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8640_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 14443857 - 14443511
Alignment:
| Q |
1 |
tagtttaacattctaatagggataaaaatgaaggagaaaaacaaaagtagatattattgttgaatgagaattcattcacttcccctagaaaaacatacaa |
100 |
Q |
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| T |
14443857 |
tagtttaacattctaatagggataaaaatgaaggagaaaaacaaaagtagatattattgttgaatgagaattcattcacttcccctagaaaaacatacaa |
14443758 |
T |
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| Q |
101 |
attcatttttatattcactcaaaaaagtaacttgattttatattcaaattttgacttttatggtttgatccaacagtcatgatttacacatctccttcac |
200 |
Q |
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| T |
14443757 |
attcatttttatattcactcaaaaaagtaacttgattttatattcaaattttgacttttatggtttgatccaacagtcatgatttacacatctccttcac |
14443658 |
T |
|
| Q |
201 |
attagaaagcactctctccctatatatatgtatgcagacacaacggcaaaataaataaaaataaaccaaacaccaatcaagagtgatagtgagacacaaa |
300 |
Q |
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| T |
14443657 |
attagaaagcactctctccctatatatatgtatgcagacacaacggcaaaataaataaaaataaaccaaacaccaatcaagagtgatagtgagacacaaa |
14443558 |
T |
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| Q |
301 |
atatggtggttgctactactaatggttcgtctcctttctcacccaat |
347 |
Q |
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| T |
14443557 |
atatggtggttgctactactaatgtttcttctcctttctcacccaat |
14443511 |
T |
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