View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8640_high_3 (Length: 362)
Name: NF8640_high_3
Description: NF8640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8640_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 40858602 - 40858928
Alignment:
| Q |
9 |
gagatgaatctatgataaccataacnnnnnnnnccttcaaatataaatttgaaagaagaacctattgagattcttgtttacctttaaatcatgaaattat |
108 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40858602 |
gagatgaatctttgataaccataacaaaaaaaaccttcaaatgtaaatttgaaagaagaacctattgagattcttgtttacctttaaatcatgaaattac |
40858701 |
T |
|
| Q |
109 |
gacatatgtcacatctagaatcaaaggcgttagaaagtgattctgaagagctaccacttcaaatcatatcatgtacttcaggagataaaacatctcacat |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40858702 |
gacatatgtcacacctagaatcaaaggcgttagaaagtgattctgaagagctaccacttcaaatcatatcatgtacttcaggagataaaacatctcacat |
40858801 |
T |
|
| Q |
209 |
ctataatcaacggctgtataaagtgatcttgaagagccactatttatagtcatatcatgcttaggagataaaacaaaggttgtgatctagaacaactcat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40858802 |
ctataatcaacggctgtataaagtgatcttgaagagccactatttatagtcatatcatgcttaggagataaaataaaggttgtgatctagaacaactcat |
40858901 |
T |
|
| Q |
309 |
ctttgatgaatttaccatgtagtttgt |
335 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
40858902 |
ctttgatgaattcaccatgtagtttgt |
40858928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University