View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8640_low_1 (Length: 413)

Name: NF8640_low_1
Description: NF8640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8640_low_1
NF8640_low_1
[»] chr2 (4 HSPs)
chr2 (137-395)||(40058949-40059207)
chr2 (137-395)||(40084887-40085145)
chr2 (137-395)||(40076963-40077235)
chr2 (18-73)||(40077299-40077354)
[»] chr3 (2 HSPs)
chr3 (142-271)||(53322412-53322539)
chr3 (163-238)||(44352747-44352822)
[»] chr4 (3 HSPs)
chr4 (162-236)||(22016224-22016298)
chr4 (306-392)||(22016597-22016683)
chr4 (145-264)||(20005703-20005812)
[»] chr8 (1 HSPs)
chr8 (150-250)||(5450715-5450814)
[»] chr7 (2 HSPs)
chr7 (179-240)||(35052914-35052975)
chr7 (200-273)||(35052966-35053039)
[»] chr5 (2 HSPs)
chr5 (209-264)||(12735846-12735901)
chr5 (209-264)||(12798673-12798728)
[»] chr1 (1 HSPs)
chr1 (145-264)||(14124553-14124662)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 137 - 395
Target Start/End: Complemental strand, 40059207 - 40058949
Alignment:
Q  137 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059207 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 40059108  T
Q  237 taaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaata 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059107 taaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaata 40059008  T
Q  337 gaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatc 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059007 gaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatc 40058949  T

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Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 137 - 395
Target Start/End: Complemental strand, 40085145 - 40084887
Alignment:
Q  137 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085145 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 40085046  T
Q  237 taaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaata 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085045 taaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaata 40084946  T
Q  337 gaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatc 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40084945 gaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatc 40084887  T

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Target: chr2; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 137 - 395
Target Start/End: Complemental strand, 40077235 - 40076963
Alignment:
Q  137 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077235 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 40077136  T
Q  237 taaacaacaacaaattcagcactgtttaaattc--------------aacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactac 322  Q
    |||||||||||||||||||||||||||||| ||              ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077135 taaacaacaacaaattcagcactgtttaaaatcaaatacaatgcaaaaactcacaaacagaatcaaagagagacataaaataaaacctgtggagtactac 40077036  T
Q  323 gagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatc 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077035 gagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatc 40076963  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 40077354 - 40077299
Alignment:
Q  18 actaattctatctgcaatgcaaactttttctttcacacactaacataggaaatgct 73  Q
    |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||    
T  40077354 actaattctatctgcaattcaaactttttctttcacatattaacataggaaatgct 40077299  T

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Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 53322539 - 53322412
Alignment:
Q  142 cctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaac 241  Q
    |||||||| |||| |||||||||||||||| ||||| |||  ||||||| || |||||||||| || |||| ||||| |||| ||||||||||||||| |    
T  53322539 cctttaactggtttatgtaagttccagaaa-catag-tttggatgacataaaatcctccatctatatatttttgaatgaggtttggccacatctataacc 53322442  T
Q  242 aacaacaaattcagcactgtttaaattcaa 271  Q
    ||||||||||||| ||| ||||||| ||||    
T  53322441 aacaacaaattcaacaccgtttaaaatcaa 53322412  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 44352747 - 44352822
Alignment:
Q  163 ttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctata 238  Q
    ||||||||||||||||||||||||||||| | ||| || ||||| | | | ||||||||  | |||||||||||||    
T  44352747 ttccagaaaacataggtttcaatgacatctattccaccttcttttgctgtttgaataagagcaggccacatctata 44352822  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 22016224 - 22016298
Alignment:
Q  162 gttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 236  Q
    ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||||||    
T  22016224 gttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatcta 22016298  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 392
Target Start/End: Original strand, 22016597 - 22016683
Alignment:
Q  306 aacctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcata 392  Q
    |||||| ||||| |||||||| || ||||| |||||||| || |  || || ||||||||||||||||||||||||||||| |||||    
T  22016597 aacctgaggagtgctacgaggataatgaatggaaccagacataagaaccctgcgtttaccatcaatgaccaatgctctatgatcata 22016683  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 264
Target Start/End: Complemental strand, 20005812 - 20005703
Alignment:
Q  145 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 244  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  20005812 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 20005723  T
Q  245 aacaaattcagcactgttta 264  Q
    |||||||||| ||| |||||    
T  20005722 aacaaattcaacaccgttta 20005703  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 5450814 - 5450715
Alignment:
Q  150 aggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaa 249  Q
    ||||||||||   ||||||||||||||||||| ||| ||||| | |||||| |||||||  ||||| ||||| |||||||||||||| ||||||||||||    
T  5450814 aggttcatgtccattccagaaaacataggtttgaatcacatccaatcctccttctttagccttctggataagatctggccacatcta-aaacaacaacaa 5450716  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 35052914 - 35052975
Alignment:
Q  179 tttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaa 240  Q
    |||| ||||||| ||||||||||||| || |||| |||||||||| ||||||||||||||||    
T  35052914 tttcgatgacataaagtcctccatctataaatttttgaataaggtttggccacatctataaa 35052975  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 35052966 - 35053039
Alignment:
Q  200 catctttagatttctgaataaggtctggccacatctataaacaacaacaaattcagcactgtttaaattcaaca 273  Q
    ||||| || |||| |||||||||| ||||||||||||||| |||| ||||||||| |||  |||||| ||||||    
T  35052966 catctataaatttttgaataaggtttggccacatctataaccaacgacaaattcaacaccttttaaaatcaaca 35053039  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 12735846 - 12735901
Alignment:
Q  209 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 264  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12735846 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12735901  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 12798673 - 12798728
Alignment:
Q  209 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 264  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12798673 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12798728  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 14124553 - 14124662
Alignment:
Q  145 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 244  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  14124553 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 14124642  T
Q  245 aacaaattcagcactgttta 264  Q
    |||||||||| ||| |||||    
T  14124643 aacaaattcaacaccgttta 14124662  T

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