View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8641_high_1 (Length: 548)
Name: NF8641_high_1
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_high_1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Complemental strand, 7266878 - 7266349
Alignment:
| Q |
19 |
aggtggggctaggacagaacatgttgataaagtcataagtttactacttgcaaacattaggtgattaatttgttgaagatagtagtgagtggtttgatcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7266878 |
aggtggggctaggacagaacatgttgataaagtcataagtttactacttgcatacattaggtgattaatttgttgaagatagtagtgagtggtttgatcc |
7266779 |
T |
|
| Q |
119 |
tttagcattatatataccaaacaatccaatccaatatgccacacaacaatattaataatcatcagacaagcctctttgcagtcacttgtcacaatgtctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7266778 |
tttagcattatatataccaaacaatccaatccaatatgccacacaacaatattaataatcatcagacaagcctctttgcagtcacttgtcacaatgtctt |
7266679 |
T |
|
| Q |
219 |
tcaccaaagtcattcttcttgtagcagcttttctctcagttacactctcccatgctcatcctgtccatgatttccacttcggctggggtggtcatcatgg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7266678 |
tcaccaaagtcattcttcttgtagcagcttttctctcagttacactctcccatgctcatcctgtccatgatttccactttggctggggtggtcatcatgg |
7266579 |
T |
|
| Q |
319 |
tggaaccactagaggaatgtcttttggactttctcctcaattctatcagttttcatgccctcaagctaatgacattgtcatgtcagtcttggagaaggcc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7266578 |
tggaaccactagaggaatgtcttttggactttctcctcaattctatcagttttcatgccctcaagctaatgacattgtcatgtcagtcttggagaaggcc |
7266479 |
T |
|
| Q |
419 |
attgctaaggatatcagaatagcagcttctcttcttcgactgcacttccacgacggtttcgtgcaggtaaatttcaaacacaatagcaatacatgttcta |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7266478 |
attgctaaggatatcagaatagcagcttctcttcttcgacttcacttccacgactgcttcgtgcaggtaaatttcaaacacaatagcaatacatgttcta |
7266379 |
T |
|
| Q |
519 |
aatactggtgtgagtcgcgacataaaggtt |
548 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
7266378 |
aatactggtctgagtcgcgacataaaggtt |
7266349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University