View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8641_low_10 (Length: 304)
Name: NF8641_low_10
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 36370025 - 36370286
Alignment:
| Q |
1 |
tttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaagttaaac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36370025 |
tttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgt---ccagagattcaggtcaaggcaaagaagagtttaaaaatgaagttaaac |
36370121 |
T |
|
| Q |
101 |
ttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36370122 |
ttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaag |
36370221 |
T |
|
| Q |
201 |
cctagacttctttatattcagtaagcatctttctagctcagtcattgtatctctagcctgaatga |
265 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36370222 |
cctagacttctttatattcagtaagcatctttctagctcagtcattgtatctctagcctgaatga |
36370286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 36428371 - 36428585
Alignment:
| Q |
1 |
tttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaagttaaac |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| |||||| |
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| T |
36428371 |
tttcagggttgcttggttagtggacaagagatagcagtgaaaagattgt---ccagagattcaggtcaaggcaaagaagagtttaagaatgaaattaaac |
36428467 |
T |
|
| Q |
101 |
ttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaag |
200 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36428468 |
ttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgctagtttatgaatatctaccaaacaaaag |
36428567 |
T |
|
| Q |
201 |
cctagacttctttatatt |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
36428568 |
cctagacttctttatatt |
36428585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 36388988 - 36389241
Alignment:
| Q |
1 |
tttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaagttaaac |
100 |
Q |
| |
|
||||||||| ||||||||| |||| ||||||| |||||||||||||||| | || | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36388988 |
tttcagggtagcttggttaatggacaagagatagcagtgaaaagattgtcg--caaa-attcaggtcaaggaaaagaagagtttaaaactgaagttaaac |
36389084 |
T |
|
| Q |
101 |
ttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaag |
200 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36389085 |
ttttagttaaactccaacacagaaatctagtaaggttgctcagttgttgctttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaag |
36389184 |
T |
|
| Q |
201 |
cctagacttctttatattcagtaagcatctttctagctcagtcattgtatctctagc |
257 |
Q |
| |
|
||||||| | |||||||||||||||||||| || | |||| | ||||| |||||||| |
|
|
| T |
36389185 |
cctagacctttttatattcagtaagcatctctcaaactcacttattgtctctctagc |
36389241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 36406306 - 36406521
Alignment:
| Q |
1 |
tttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaagttaaac |
100 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |||||||||| |||||||||| |||||||| |||| |||||||||||||||| ||| || |
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| T |
36406306 |
tttcagggttgcttggttaatggacaagagattgcagttaaaagattgt---ccagagattctggtcaaggcaaagtagagtttaaaaatgaaattacac |
36406402 |
T |
|
| Q |
101 |
ttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaag |
200 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
36406403 |
ttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgttagtttatgaatacctaccaaacaaaag |
36406502 |
T |
|
| Q |
201 |
cctagacttctttatattc |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
36406503 |
cctagacttctttatattc |
36406521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 36375265 - 36375479
Alignment:
| Q |
1 |
tttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaagttaaac |
100 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||||||||||| | | | |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
36375265 |
tttcagggttgcttggttaatggacaagagatagcagtgaaaagattgtcg---aaaaattcaggtcaaggaaaagaagagtttaaaactgaagttaaac |
36375361 |
T |
|
| Q |
101 |
ttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaag |
200 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
36375362 |
ttttagttaaactccaacacagaaatctagtgaggttgctaggttgttgctttgaaaaggaagaaaggatgctggtttatgaatacttaccaaacaaaag |
36375461 |
T |
|
| Q |
201 |
cctagacttctttatatt |
218 |
Q |
| |
|
|||||| ||||||||||| |
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| T |
36375462 |
cctagatttctttatatt |
36375479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 36434872 - 36435084
Alignment:
| Q |
4 |
cagggttgcttggttagtggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaagttaaacttt |
103 |
Q |
| |
|
||||||||||||| || |||| ||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
36434872 |
cagggttgcttggctaatggacaagagatagcagtgaaaagattgt---ccaaaaattcaggtcaaggaaaagaagagtttaaaactgaagttacgcttt |
36434968 |
T |
|
| Q |
104 |
tagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaagcct |
203 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
36434969 |
tagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgttagtttatgaatacctaccaaacaaaagcct |
36435068 |
T |
|
| Q |
204 |
agacttctttatattc |
219 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36435069 |
ggacttctttatattc |
36435084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 36418411 - 36418650
Alignment:
| Q |
21 |
tggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaagttaaacttttagtcaaacttcaacac |
120 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||| ||||||||||||| ||||| |||||| |
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|
| T |
36418411 |
tggacaagagatagcagtgaaaagattgt---ccagagattctggtcaaggcaaagaagagtttaagaatgaaattaaacttttagttaaactccaacac |
36418507 |
T |
|
| Q |
121 |
agaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaagcctagacttctttatattca |
220 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |
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|
| T |
36418508 |
agaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgctagtttacgaatacctatcaaacaaaagcctagacttctttatattcg |
36418607 |
T |
|
| Q |
221 |
gtaagcatctttctagctcagtcattgtatctctagcctgaat |
263 |
Q |
| |
|
||| || ||| ||| ||| ||||||| |||||| ||||||| |
|
|
| T |
36418608 |
gtatgcctctctctgaatcaatcattgtctctctaacctgaat |
36418650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 36398538 - 36398792
Alignment:
| Q |
4 |
cagggttgcttggttagtggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaagttaaacttt |
103 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||||||||||||||| ||| ||| ||||||||||| |||| |||||||||||||||| ||| ||||| |
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|
| T |
36398538 |
cagggttgcttggttaatggacaagagatagcagtgaaaagattgt---ccaaagaatcaggtcaaggcaaagtagagtttaaaaatgaaattacacttt |
36398634 |
T |
|
| Q |
104 |
tagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaagcct |
203 |
Q |
| |
|
|||| || || || |||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
36398635 |
tagttaagctccagcacagaaatctagtaaggttgcttggttgttgcttcgaaaaagaagaaagaatgctagtttatgaatacctaccaaacaaaagcct |
36398734 |
T |
|
| Q |
204 |
agacttctttatattcagtaagcatctttctagctcagtcattgtatctctagcctgaat |
263 |
Q |
| |
|
|||||||||||||||| ||| | ||| ||| |||| ||||||| |||||||| ||||| |
|
|
| T |
36398735 |
agacttctttatattcggtatg--tctctctgactcactcattgtctctctagcttgaat |
36398792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 47583965 - 47584021
Alignment:
| Q |
78 |
agagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgag |
134 |
Q |
| |
|
||||||||||||||| ||| || || ||| ||| ||||||||||||||||||||||| |
|
|
| T |
47583965 |
agagtttaaaaatgaggttcaagttatagccaagcttcaacacagaaatctagtgag |
47584021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 47640295 - 47640335
Alignment:
| Q |
163 |
gaaaggatgctagtttatgaatacttaccaaacaaaagcct |
203 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||||||||| |
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|
| T |
47640295 |
gaaaagatgcttgtttatgaatacataccaaacaaaagcct |
47640335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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