View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8641_low_12 (Length: 289)
Name: NF8641_low_12
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 9732868 - 9732998
Alignment:
| Q |
16 |
aagaaacacacttgttccatgtgaccttgaggaaagtagaaaactctgtcaccagtattaggaacatccaccaaaggtcctgcacacaacttccataact |
115 |
Q |
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| T |
9732868 |
aagaaacacacttgttccatgtgaccttgaggaaagtagaaaactctgtcaccagtattaggaacatccaccaaaggtcctgcacacaacttccataact |
9732967 |
T |
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| Q |
116 |
cttcatacaaatcatcatttttaacacctgc |
146 |
Q |
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| T |
9732968 |
cttcatacaaatcatcatttttaacacctgc |
9732998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 9733042 - 9733120
Alignment:
| Q |
195 |
ttaatgcccttgatttgtttctgaaaaagtttacaactttaatcttcaatttcttcctccatgttcataaggtaaaagg |
273 |
Q |
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| T |
9733042 |
ttaatgcccttgatttgtttctgaaaaagtttacaactttaatcttcaatttcttcctccatgttcataaggtaaaagg |
9733120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 22756871 - 22756828
Alignment:
| Q |
19 |
aaacacacttgttccatgtgaccttgaggaaagtagaaaactct |
62 |
Q |
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| T |
22756871 |
aaacaaacttgttccatgtgtccttgaggaaaatagaaaactct |
22756828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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