View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8641_low_13 (Length: 287)
Name: NF8641_low_13
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 34820162 - 34819906
Alignment:
| Q |
12 |
aagaagaaagggaagagtgataaaggcgagacaaacaagaagaatgatgatagtatttgtacaaagccaccagttgagaaaagagttagctgccaagaac |
111 |
Q |
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| T |
34820162 |
aagaagaaagggaagagtgataaaggcgagacaaccaagaagaatgatggtagtatttgtacaaagccaccagctgagaaaagagttagctgccaagaac |
34820063 |
T |
|
| Q |
112 |
ataaaggaacgagaataaatgtgtttagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctggaagttttattgacgagagtatcac |
211 |
Q |
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||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||| |
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| T |
34820062 |
ataaaggaatgagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggagttttgttgacgagagtatcac |
34819963 |
T |
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| Q |
212 |
caaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaact |
268 |
Q |
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||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
34819962 |
caaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaact |
34819906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 34819886 - 34819841
Alignment:
| Q |
12 |
aagaagaaagggaagagtgataaaggcgagacaaacaagaagaatg |
57 |
Q |
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| T |
34819886 |
aagaagaaagggaagagtgataaaggcgaggccaacaagaagaatg |
34819841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 34820729 - 34820648
Alignment:
| Q |
189 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaacttg |
270 |
Q |
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| T |
34820729 |
agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatcagcttg |
34820648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 34820612 - 34820536
Alignment:
| Q |
189 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca |
265 |
Q |
| |
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|||||| ||||||| |||||||| |||| |||||| ||||||| |||||||||||| ||| | || |||||||||| |
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| T |
34820612 |
agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatca |
34820536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 34835165 - 34835101
Alignment:
| Q |
65 |
tatttgtacaaagccaccagttgagaaaagagttagctgccaagaacataaaggaacgagaataa |
129 |
Q |
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||||||||||||| | || || |||||||||||||| || || ||||||||||||| |||||||| |
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| T |
34835165 |
tatttgtacaaagacgccggtcgagaaaagagttaggtgtcatgaacataaaggaatgagaataa |
34835101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 34820846 - 34820807
Alignment:
| Q |
189 |
agttttattgacgagagtatcaccaaaaatgatgttggta |
228 |
Q |
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|||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
34820846 |
agttttgttgacgagagtatcacaaaaaatgatgttggta |
34820807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 34820377 - 34820299
Alignment:
| Q |
190 |
gttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaact |
268 |
Q |
| |
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||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||| | | ||||||||||||| |
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| T |
34820377 |
gttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaact |
34820299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 34820495 - 34820419
Alignment:
| Q |
189 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca |
265 |
Q |
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|||||| ||||||||||| ||| |||||||||||||||| | |||||||||||| ||| | || |||||||||| |
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| T |
34820495 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatca |
34820419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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