View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8641_low_14 (Length: 269)
Name: NF8641_low_14
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 269
Target Start/End: Complemental strand, 10289282 - 10289049
Alignment:
| Q |
27 |
gtttcgttatatccttcacctgatacatctctttattcatttgatactttggtggctcaacacttgagtccaatccctttgtctggaattatcaatgatg |
126 |
Q |
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| T |
10289282 |
gtttcgttatatccttcacctgatacatctctttgttcatttgataatttggtggctcaacacttgagtccaatccctttgtctggaattatcaatgatg |
10289183 |
T |
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| Q |
127 |
aggtcaatatatggaaagagagatagaaagtcttataactaatgatcttgttgaagaactcacaaaggatttgctctgagaagtaacattttacatgaaa |
226 |
Q |
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| T |
10289182 |
aggtcaatatatggaaagagagatagaaagtcttataactaatgatcttgttgaagaactcacaaaggatttgctctgagaagtaacatttta------- |
10289090 |
T |
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| Q |
227 |
atcatgacaataaagagttccatacatggagcaagggttatac |
269 |
Q |
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| T |
10289089 |
--aatgacaataaagagttccatacatggagcaagggttatac |
10289049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 9748263 - 9748502
Alignment:
| Q |
30 |
tcgttatatccttcacctgatacatctctttattcatttgatactttggtggctcaacacttgagtccaatccctttgtctggaattatcaatgatgagg |
129 |
Q |
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| T |
9748263 |
tcgttatatccttcactggatatgtctctttattcacttgatactttggtagctcaacatttgacttcaatcccttggtctggaataatcaatgatgaga |
9748362 |
T |
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| Q |
130 |
tcaatata-tggaaagagagatagaaagtcttataactaatgatcttgttgaagaactcacaaaggatttgctctgagaagtaacattttacatgaaaat |
228 |
Q |
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| T |
9748363 |
tcaatatattggaaagagaggttgaatgtcttataactaatgatcttgttgaagaactcacaaaggatttgctctgagaaat-acatcttacatgaaaat |
9748461 |
T |
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| Q |
229 |
catgacaataaagagttccataca-tggagcaagggttata |
268 |
Q |
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| T |
9748462 |
tatgacaataaagagttccatacattggagcaagggttata |
9748502 |
T |
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