View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8641_low_18 (Length: 241)
Name: NF8641_low_18
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 45307421 - 45307201
Alignment:
| Q |
1 |
cagagttgtttccagtaactcctcctcctcccattagattgttactgctgcttatttcatcagattttcttttctccttatgatcaggattctttctcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45307421 |
cagagttgtttccagtaactcctcctcc---cattagattgttactgctgcttatttcatcagattttcttttctccttatgatcaggattctttctcat |
45307325 |
T |
|
| Q |
101 |
atattccatcaaattgtttctcaatgtgttgtaattctcacacatctctgtcaacattcctgtcaacttcttgttttctgcactcactcgtttcagctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45307324 |
atattccatcaaattgtttctcaatgtgttgtaattctcacacatctctgtcaacattcctgtcaacttcttgttttctgcactcactcgtttcagctcc |
45307225 |
T |
|
| Q |
201 |
tccaccaaggcaccacttgactga |
224 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
45307224 |
tccaccaaggcaacacttgactga |
45307201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 927893 - 927848
Alignment:
| Q |
97 |
tcatatattccatcaaattgtttctcaatgtgttgtaattctcaca |
142 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
927893 |
tcatatattccatcaaatgacttctcaaagtgttgtaattctcaca |
927848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University