View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8641_low_19 (Length: 238)

Name: NF8641_low_19
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8641_low_19
NF8641_low_19
[»] chr3 (21 HSPs)
chr3 (23-220)||(10412484-10412681)
chr3 (23-220)||(9528844-9529043)
chr3 (23-220)||(34802696-34802893)
chr3 (23-177)||(8344852-8345005)
chr3 (116-220)||(15659019-15659120)
chr3 (29-177)||(18045107-18045254)
chr3 (29-177)||(18061164-18061311)
chr3 (29-152)||(4448102-4448223)
chr3 (116-220)||(14453300-14453399)
chr3 (29-177)||(4692944-4693091)
chr3 (116-177)||(8228371-8228429)
chr3 (29-80)||(28011557-28011608)
chr3 (29-79)||(4682935-4682985)
chr3 (116-177)||(18001468-18001526)
chr3 (29-79)||(8228282-8228332)
chr3 (116-177)||(4682838-4682896)
chr3 (29-67)||(4622205-4622243)
chr3 (29-67)||(4633209-4633247)
chr3 (31-73)||(14453213-14453255)
chr3 (29-69)||(18001565-18001605)
chr3 (116-152)||(28011487-28011523)
[»] chr5 (10 HSPs)
chr5 (23-220)||(29883469-29883666)
chr5 (130-220)||(15494476-15494567)
chr5 (23-78)||(32450964-32451019)
chr5 (116-220)||(35398151-35398250)
chr5 (29-213)||(33771388-33771565)
chr5 (29-152)||(33786399-33786520)
chr5 (29-79)||(23733794-23733844)
chr5 (116-204)||(23733885-23733968)
chr5 (108-177)||(32451051-32451117)
chr5 (31-73)||(35398063-35398105)
[»] chr6 (14 HSPs)
chr6 (29-220)||(26993869-26994060)
chr6 (29-220)||(27028211-27028403)
chr6 (23-220)||(16560286-16560485)
chr6 (23-79)||(26983097-26983153)
chr6 (23-79)||(27034159-27034215)
chr6 (116-220)||(27644906-27645005)
chr6 (29-177)||(15403524-15403671)
chr6 (29-177)||(15415311-15415458)
chr6 (29-177)||(15430903-15431050)
chr6 (116-177)||(26983000-26983058)
chr6 (116-177)||(27034062-27034120)
chr6 (29-67)||(14135992-14136030)
chr6 (29-67)||(14148063-14148101)
chr6 (31-73)||(27645051-27645093)
[»] chr7 (13 HSPs)
chr7 (23-220)||(14931415-14931614)
chr7 (23-220)||(15354853-15355050)
chr7 (23-220)||(35970304-35970501)
chr7 (23-220)||(35991716-35991913)
chr7 (116-220)||(30306774-30306876)
chr7 (116-177)||(20591162-20591220)
chr7 (115-152)||(15602309-15602346)
chr7 (29-78)||(20591258-20591307)
chr7 (29-80)||(15602379-15602430)
chr7 (29-67)||(2112619-2112657)
chr7 (31-73)||(30306922-30306964)
chr7 (29-67)||(45729781-45729819)
chr7 (29-67)||(45740683-45740721)
[»] chr1 (2 HSPs)
chr1 (23-220)||(26796480-26796677)
chr1 (23-220)||(24652882-24653079)
[»] scaffold0053 (1 HSPs)
scaffold0053 (23-220)||(37911-38109)
[»] scaffold0070 (1 HSPs)
scaffold0070 (23-220)||(50963-51160)
[»] scaffold0355 (3 HSPs)
scaffold0355 (23-200)||(13804-13984)
scaffold0355 (23-200)||(16144-16324)
scaffold0355 (23-200)||(16665-16845)
[»] scaffold0089 (1 HSPs)
scaffold0089 (23-177)||(53210-53363)
[»] scaffold0112 (1 HSPs)
scaffold0112 (23-79)||(10433-10489)
[»] chr8 (3 HSPs)
chr8 (116-220)||(14361123-14361225)
chr8 (29-79)||(31341070-31341120)
chr8 (116-204)||(31341161-31341244)
[»] chr4 (4 HSPs)
chr4 (29-177)||(13439527-13439674)
chr4 (29-177)||(30276780-30276927)
chr4 (116-204)||(20307257-20307340)
chr4 (29-76)||(20307384-20307431)
[»] chr2 (4 HSPs)
chr2 (116-204)||(23119886-23119969)
chr2 (29-177)||(12649438-12649585)
chr2 (29-177)||(12664359-12664506)
chr2 (29-79)||(23120010-23120060)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 10412681 - 10412484
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10412681 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaaac 10412582  T
Q  123 gcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10412581 gcgttacctctgtcgtagaacggagaaaaaagatattcagaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 10412484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 9529043 - 9528844
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  9529043 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 9528944  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9528943 acgcgttacctctgtcgtagaacggagaaaaaagatatccggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctattgcctccgttggtgtt 9528844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 34802696 - 34802893
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  34802696 acacagaagcctagatctacaaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 34802795  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  34802796 acgcgttacatctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctcttt--cgcgcgcgctatagcctccgttggtgtt 34802893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 8345005 - 8344852
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||||||||||| ||||||||    
T  8345005 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaatgcgcggaaatggcttagaaaggaaggagaa 8344906  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    |||||||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  8344905 acgcgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 8344852  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 15659019 - 15659120
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaa-cttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgtt 214  Q
    |||||| ||||||||||||||||  ||||||||||||   | ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  15659019 gagaaatgcgttacctctgtcgtgaaacggagaaaaa---tcttcggaaaaacttcgaatc-ctcctcttctctttcgcgcgcgcgctataccctccgtt 15659114  T
Q  215 ggtgtt 220  Q
    ||||||    
T  15659115 ggtgtt 15659120  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 18045254 - 18045107
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| |||    
T  18045254 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgcg 18045156  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  18045155 ttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 18045107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 18061311 - 18061164
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| |||    
T  18061311 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgcg 18061213  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  18061212 ttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 18061164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 4448223 - 4448102
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaaacgcgtta 128  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||  | | | ||||||| |||  |   | ||||    |||||| ||||||    
T  4448223 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttca--ctacatatgcgcgcaaaacggagaaaaaggggagagaaatgcgtta 4448126  T
Q  129 cctctgtcgtagaacggagaaaaa 152  Q
    ||||||||||||||||||||||||    
T  4448125 cctctgtcgtagaacggagaaaaa 4448102  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 14453300 - 14453399
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaa-cttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgtt 214  Q
    |||||| ||||||||||||||||  |||||||||||    | ||||||||| ||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  14453300 gagaaatgcgttacctctgtcgtgaaacggagaaaag---tcttcggaaaaacttcgaatc-ctcctcttctctttcgcg--cgcgctataccctccgtt 14453393  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 4693091 - 4692944
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| |||    
T  4693091 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgcg 4692993  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    |||||||| |||||||||||||||||   || ||||||||||||||||||||    
T  4692992 ttacctctatcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 4692944  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 8228371 - 8228429
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    |||||| |||||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  8228371 gagaaatgcgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 8228429  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 28011608 - 28011557
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttca 80  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  28011608 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttca 28011557  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 4682985 - 4682935
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 79  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  4682985 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttc 4682935  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 18001526 - 18001468
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    |||||| ||||||||||||| |||||||||||||||   || ||||||||||||||||||||    
T  18001526 gagaaatgcgttacctctgtggtagaacggagaaaa---atcttcggaaaacttcgaatctc 18001468  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 8228282 - 8228332
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 79  Q
    ||||||||||||||||||   || |||||||||||||||||||||||||||    
T  8228282 aagcctagatctacaaatacatacccgtaacaaactttttcacactttttc 8228332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 4682896 - 4682838
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    |||||| ||||||||||| |||||||||||||||||   || |||||| |||||||||||||    
T  4682896 gagaaatgcgttacctctatcgtagaacggagaaaa---atcttcggataacttcgaatctc 4682838  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 4622243 - 4622205
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttt 67  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  4622243 aagcctagatctacaaatcttgattcgtaacaaactttt 4622205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 4633247 - 4633209
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttt 67  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  4633247 aagcctagatctacaaatcttgattcgtaacaaactttt 4633209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 14453213 - 14453255
Alignment:
Q  31 gcctagatctacaaatctttatccgtaacaaactttttcacac 73  Q
    ||||||||||||||||   ||||||||||||||||||||||||    
T  14453213 gcctagatctacaaatacatatccgtaacaaactttttcacac 14453255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 18001605 - 18001565
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttc 69  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  18001605 aagcctagatctacaaatacatatccgtaacaaactttttc 18001565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 28011523 - 28011487
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaa 152  Q
    |||||| | ||||||||||||||||||||||||||||    
T  28011523 gagaaatgtgttacctctgtcgtagaacggagaaaaa 28011487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 29883469 - 29883666
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaaac 122  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29883469 acacaaaagcctagatctactaatttttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcggaaatgacttagaaagaaaggagaaac 29883568  T
Q  123 gcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29883569 gcgttacctctgtcgtagaacggagaaaaaagatattcagaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 29883666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 15494567 - 15494476
Alignment:
Q  130 ctctgtcgtagaacggagaaaaaa-gatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||    
T  15494567 ctctgtcgtagaacggagaaaaaaagatattcggaaaacttcgaatctctcctcttctctctcacgcgcgcgctatagcctccgttggtgtt 15494476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 32450964 - 32451019
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacacttttt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450964 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacacttttt 32451019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 35398151 - 35398250
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcgg-aaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgtt 214  Q
    |||||| ||||||||||||||||  |||||||||||   || ||||| ||||||||||||| ||||||||||||||  ||||||||||||| ||||||||    
T  35398151 gagaaatgcgttacctctgtcgtgaaacggagaaaa---atcttcggaaaaacttcgaatc-ctcctcttctcttt--cgcgcgcgctataccctccgtt 35398244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 33771565 - 33771388
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaaacgcgtta 128  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||  | | | ||||||| |||  |   | ||||    |||||| ||||||    
T  33771565 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttca--ctacatatgcgcgcaaaacggagaaaaaggggagagaaatgcgtta 33771468  T
Q  129 cctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgt 213  Q
    |||||||||||||||||||||||   |  |||| |||||||||| || |||||||||||  ||||||||||||||| | ||||||    
T  33771467 cctctgtcgtagaacggagaaaa---accttcgaaaaacttcgagtc-ctcctcttctc-ctcgcgcgcgcgctatgtgctccgt 33771388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 33786520 - 33786399
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaaacgcgtta 128  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||  | | | ||||||| |||  |   | ||||    |||||| ||||||    
T  33786520 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttca--ctacatatgcgcgcaaaacggagaaaaaggggagagaaatgcgtta 33786423  T
Q  129 cctctgtcgtagaacggagaaaaa 152  Q
    ||||||||||||||||||||||||    
T  33786422 cctctgtcgtagaacggagaaaaa 33786399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 23733794 - 23733844
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 79  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  23733794 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttc 23733844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 23733885 - 23733968
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctat 204  Q
    |||||| |||||||||||||||||||||||||||||   || ||||||||||||| | || |||||||||||  |||||||||||||||    
T  23733885 gagaaatgcgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcaagtc-ctcctcttctc-ctcgcgcgcgcgctat 23733968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 32451051 - 32451117
Alignment:
Q  108 aaagaaaggagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||| | |||||| ||| |||||||||||||||||||||||||   || ||||||||||||||||||||    
T  32451051 aaagagaagagaaatgcgatacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 32451117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 35398063 - 35398105
Alignment:
Q  31 gcctagatctacaaatctttatccgtaacaaactttttcacac 73  Q
    ||||||||||||||||   ||||||||||||||||||||||||    
T  35398063 gcctagatctacaaatacatatccgtaacaaactttttcacac 35398105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 26994060 - 26993869
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaaacgcgtta 128  Q
    ||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26994060 aagcctagatctacaaatacatgtccgtaacaaactttttcacactttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaaacgcgtta 26993961  T
Q  129 cctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26993960 cctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 26993869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 27028403 - 27028211
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacacttttt-caagcaagaaatgcgcggaaatggcttagaaagaaaggagaaacgcgtt 127  Q
    ||||||||||||||||||   | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27028403 aagcctagatctacaaatacatgtccgtaacaaactttttcacacttttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaaacgcgtt 27028304  T
Q  128 acctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27028303 acctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 27028211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 16560485 - 16560286
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  16560485 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 16560386  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16560385 acgcgttacctctgtcgtagaacggagaaaaaagataatcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatagcctccgttggtgtt 16560286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 26983153 - 26983097
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26983153 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 26983097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 27034215 - 27034159
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27034215 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 27034159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 27645005 - 27644906
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcgg-aaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgtt 214  Q
    |||||| ||||||||||||||||  |||||||||||   || ||||| ||||||||||||| ||||||||||||||  ||||||||||||| ||||||||    
T  27645005 gagaaatgcgttacctctgtcgtgaaacggagaaaa---atcttcggaaaaacttcgaatc-ctcctcttctcttt--cgcgcgcgctataccctccgtt 27644912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 15403524 - 15403671
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| |||    
T  15403524 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgcg 15403622  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  15403623 ttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 15403671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 15415311 - 15415458
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| |||    
T  15415311 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgcg 15415409  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  15415410 ttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 15415458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 15430903 - 15431050
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| | |    
T  15430903 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgtg 15431001  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  15431002 ttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 15431050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 26983058 - 26983000
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    |||||| |||||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  26983058 gagaaatgcgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 26983000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 27034120 - 27034062
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    |||||| | |||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  27034120 gagaaatgtgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 27034062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 14135992 - 14136030
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttt 67  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  14135992 aagcctagatctacaaatcttgattcgtaacaaactttt 14136030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 14148063 - 14148101
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttt 67  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  14148063 aagcctagatctacaaatcttgattcgtaacaaactttt 14148101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 27645093 - 27645051
Alignment:
Q  31 gcctagatctacaaatctttatccgtaacaaactttttcacac 73  Q
    ||||||||||||||||   ||||||||||||||||||||||||    
T  27645093 gcctagatctacaaatacatatccgtaacaaactttttcacac 27645051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 14931415 - 14931614
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  14931415 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 14931514  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  14931515 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatagcttccgttggtgtt 14931614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 15354853 - 15355050
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  15354853 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 15354952  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  15354953 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctcttt--cgcgcgcgctatagcctccgttggtgtt 15355050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 35970501 - 35970304
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  |  |||||||||||||| ||||||||||| |||||||||  |||||||    
T  35970501 acacaaaagcctagatctacaaatctttacccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatgacttagaaagggaggagaa 35970402  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| | ||||||||||||    
T  35970401 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctccttcgcgc--gcgctatagcttccgttggtgtt 35970304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 35991913 - 35991716
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  |  |||||||||||||| ||||||||||| |||||||||  |||||||    
T  35991913 acacaaaagcctagatctacaaatctttacccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatgacttagaaagggaggagaa 35991814  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| | ||||||||||||    
T  35991813 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctccttcgcgc--gcgctatagcttccgttggtgtt 35991716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 30306876 - 30306774
Alignment:
Q  116 gagaaacgcgttacctctgt-cgtagaacggagaaaaaagatattcggaaaa-cttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgt 213  Q
    |||||| ||||||||||||| |||  ||||||||||||   | ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  30306876 gagaaatgcgttacctctgttcgtgaaacggagaaaaa---tcttcggaaaaacttcgaatc-ctcctcttctctttcgcgcgcgcgctataccctccgt 30306781  T
Q  214 tggtgtt 220  Q
    |||||||    
T  30306780 tggtgtt 30306774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 20591220 - 20591162
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    |||||| |||||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  20591220 gagaaatgcgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 20591162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 15602346 - 15602309
Alignment:
Q  115 ggagaaacgcgttacctctgtcgtagaacggagaaaaa 152  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15602346 ggagaaacgcgttacctctgtcgtagaacggagaaaaa 15602309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 20591307 - 20591258
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacacttttt 78  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||    
T  20591307 aagcctagatctacaaatacatatccgtaacaaactttttcacacttttt 20591258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 15602430 - 15602379
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttca 80  Q
    ||||||||||||||  ||   |||||||||||||||||||||||||||||||    
T  15602430 aagcctagatctaccgatacatatccgtaacaaactttttcacactttttca 15602379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 2112619 - 2112657
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttt 67  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  2112619 aagcctagatctacaaatcttgattcgtaacaaactttt 2112657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 30306964 - 30306922
Alignment:
Q  31 gcctagatctacaaatctttatccgtaacaaactttttcacac 73  Q
    ||||||||||||||||   ||||||||||||||||||||||||    
T  30306964 gcctagatctacaaatacatatccgtaacaaactttttcacac 30306922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 45729819 - 45729781
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttt 67  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  45729819 aagcctagatctacaaatcttgattcgtaacaaactttt 45729781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 45740721 - 45740683
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttt 67  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  45740721 aagcctagatctacaaatcttgattcgtaacaaactttt 45740683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 26796677 - 26796480
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  26796677 acacaaaagcctagacctacaaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 26796578  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||| ||||||||||||||    
T  26796577 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctcttt--cacgcgcgctatagcctccgttggtgtt 26796480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 24653079 - 24652882
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| |||||||||||||||||||||  |||||||    
T  24653079 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaagggaggagaa 24652980  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||| | ||||||||||||    
T  24652979 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttctaatctctcctcttctccttcgcgc--gcgctatagcttccgttggtgtt 24652882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 37911 - 38109
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||| |||||||||||| |||||||||||| ||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  37911 acacaaaagcctagatctaaaaatctttatccataacaaactttt-cacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 38009  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  38010 acgcgatacctctgttgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatagcctcagttggtgtt 38109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 51160 - 50963
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  |  |||||||||||||| ||||||||||| |||||||||  |||||||    
T  51160 acacaaaagcctagatctacaaatctttacccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatgacttagaaagggaggagaa 51061  T
Q  121 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgttggtgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||| | ||||||||||||    
T  51060 acgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttctaatctctcctcttctccttcgcgc--gcgctatagcttccgttggtgtt 50963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 13984 - 13804
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  13984 acacaagagcctagatctaccaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 13885  T
Q  121 acgcgttacctctgtcgtagaacggagaa-aaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcg 200  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  13884 acgcgttacctctgtcgtagaacggagaaaaaaagataatcggaaaacttcgaatctctcctcttctcttttgcgcgcgcg 13804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 16324 - 16144
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  16324 acacaagagcctagatctaccaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 16225  T
Q  121 acgcgttacctctgtcgtagaacggagaa-aaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcg 200  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  16224 acgcgttacctctgtcgtagaacggagaaaaaaagataatcggaaaacttcgaatctctcctcttctcttttgcgcgcgcg 16144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 16845 - 16665
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcaca--ctttttcaagcaagaaatgcgcggaaatggcttagaaagaaaggagaa 120  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  16845 acacaagagcctagatctaccaatctttatccgtaacaaactttttcacatgcaatttcaagcaagaaacgcgcggaaatggcttagaaaggaaggagaa 16746  T
Q  121 acgcgttacctctgtcgtagaacggagaa-aaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcg 200  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  16745 acgcgttacctctgtcgtagaacggagaaaaaaagataatcggaaaacttcgaatctctcctcttctcttttgcgcgcgcg 16665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 53210 - 53363
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   ||||    
T  53210 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttcta-cactacatgcgcgcgcgaaaatgaagaaaaagaggagaga 53308  T
Q  120 aacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    || |||||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  53309 aatgcgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 53363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 10489 - 10433
Alignment:
Q  23 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10489 acacaaaagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 10433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 14361123 - 14361225
Alignment:
Q  116 gagaaacgcgttacctctgt-cgtagaacggagaaaaaagatattcggaaaa-cttcgaatctctcctcttctctttcgcgcgcgcgctatatcctccgt 213  Q
    |||||| ||||||||||||| |||  ||||||||||||   | ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  14361123 gagaaatgcgttacctctgttcgtgaaacggagaaaaa---tcttcggaaaaacttcgaatc-ctcctcttctctttcgcgcgcgcgctataccctccgt 14361218  T
Q  214 tggtgtt 220  Q
    |||||||    
T  14361219 tggtgtt 14361225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 31341070 - 31341120
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 79  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  31341070 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttc 31341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 31341161 - 31341244
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctat 204  Q
    |||||| | |||||||||||||||||||||||||||   || ||||||||||||||| || |||||||||||  |||||||||||||||    
T  31341161 gagaaatgtgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgagtc-ctcctcttctc-ctcgcgcgcgcgctat 31341244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 13439674 - 13439527
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| |||    
T  13439674 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgcg 13439576  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  13439575 ttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 13439527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 30276927 - 30276780
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| |||    
T  30276927 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgcg 30276829  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  30276828 ttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgaatctc 30276780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 20307340 - 20307257
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctat 204  Q
    |||||| |||||||||||||||||||||||||||||   || ||||||||||||||| || |||||||||||  |||||||||||||||    
T  20307340 gagaaatgcgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgagtc-ctcctcttctc-ctcgcgcgcgcgctat 20307257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 20307431 - 20307384
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacacttt 76  Q
    ||||||||||||| ||||   |||||||||||||||||||||||||||    
T  20307431 aagcctagatctataaatacatatccgtaacaaactttttcacacttt 20307384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 23119969 - 23119886
Alignment:
Q  116 gagaaacgcgttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctctcctcttctctttcgcgcgcgcgctat 204  Q
    |||||| |||||||||||||||||||||||||||||   || ||||||||||||||| || |||||||||||  |||||||||||||||    
T  23119969 gagaaatgcgttacctctgtcgtagaacggagaaaa---atcttcggaaaacttcgagtc-ctcctcttctc-ctcgcgcgcgcgctat 23119886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 12649585 - 12649438
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| |||    
T  12649585 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgcg 12649487  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||||||||||||||||||||||||   || |||| |||||||||||||||    
T  12649486 ttacctctgtcgtagaacggagaaaa---atcttcgaaaaacttcgaatctc 12649438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 12664506 - 12664359
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttcaagcaagaaatgcgcg---gaaatggcttagaaagaaaggagaaacgcg 125  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| | ||  | |||||||   ||||  |   | |||||   |||||| |||    
T  12664506 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttcta-cactatatgcgcgcgcgaaaatgaagaaaaagaggagagaaatgcg 12664408  T
Q  126 ttacctctgtcgtagaacggagaaaaaagatattcggaaaacttcgaatctc 177  Q
    ||||||||||||||||||||||||||   || |||| |||||||||||||||    
T  12664407 ttacctctgtcgtagaacggagaaaa---atcttcgaaaaacttcgaatctc 12664359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 23120060 - 23120010
Alignment:
Q  29 aagcctagatctacaaatctttatccgtaacaaactttttcacactttttc 79  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  23120060 aagcctagatctacaaatacatatccgtaacaaactttttcacactttttc 23120010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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