View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8641_low_2 (Length: 484)
Name: NF8641_low_2
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 48105117 - 48105181
Alignment:
| Q |
401 |
tgttcccaaattgaaatcaaaaccgagatagaagagacatgagatccttcctccaccatcgttgt |
465 |
Q |
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| T |
48105117 |
tgttaccaaattgaaatcaaaaccgagatagaagagacatcagatccttcctcaaccatcgttgt |
48105181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 48105002 - 48105035
Alignment:
| Q |
296 |
cgatcatactttaatttccatgccattaatgttt |
329 |
Q |
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| T |
48105002 |
cgatcatattttaatttccatgccattaatgttt |
48105035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 26076083 - 26076014
Alignment:
| Q |
142 |
ttggcttaaatgtaattttgatccccctagtttcaattttgttaattttttatcatccattttctaaaat |
211 |
Q |
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| T |
26076083 |
ttggcttaaatgcaattttgatccccctattttctaatttgttaatttttgataccccattttctaaaat |
26076014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 38193851 - 38193934
Alignment:
| Q |
142 |
ttggcttaaatgtaattttgatccccctagtttcaattttgttaattttttatcatccattttctaaaatcaactttttaatccc |
226 |
Q |
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| T |
38193851 |
ttggtttaaatgcaattttgattcccctattttcaaaatcgttaacttttgat-atctattttctaaaaccaactttttgatccc |
38193934 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 39403721 - 39403768
Alignment:
| Q |
21 |
atgaagtagtaggacgagaaaaacttctgttagtataattatgtgttt |
68 |
Q |
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| T |
39403721 |
atgaagtagtaggacgggaaaaccttgtgttagtataattatgtgttt |
39403768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 29834382 - 29834300
Alignment:
| Q |
145 |
gcttaaatgtaattttgatccccctagtttcaattttgttaattttttatcatccattttctaaaatcaactttttaatccct |
227 |
Q |
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||||||||| ||||||||||||| || ||| || |||||||| ||||||| || ||||| |||||||||| |||| |||||| |
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| T |
29834382 |
gcttaaatgcaattttgatccccttatttttaaatttgttaactttttatattctattttttaaaatcaacgttttgatccct |
29834300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 11078320 - 11078264
Alignment:
| Q |
84 |
attacatttcaggttttttatcttgtttatttataacatttgagtcctttattttta |
140 |
Q |
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| T |
11078320 |
attacattagaggtcttttatcttatttatttataacattttggtcctttatcttta |
11078264 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 6305244 - 6305198
Alignment:
| Q |
174 |
tcaattttgttaattttttatcatccattttctaaaatcaacttttt |
220 |
Q |
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||||||||||||||||||||| |||||||||||||| |||| |||| |
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| T |
6305244 |
tcaattttgttaattttttatactccattttctaaaaccaacatttt |
6305198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 45879138 - 45879090
Alignment:
| Q |
145 |
gcttaaatgtaattttgatccccctagtttcaattttgttaattttttat |
194 |
Q |
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||||||||| ||||||||||||| | ||||||||||||||||||||||| |
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| T |
45879138 |
gcttaaatgcaattttgatcccca-attttcaattttgttaattttttat |
45879090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 1177660 - 1177616
Alignment:
| Q |
147 |
ttaaatgtaattttgatccccctagtttcaattttgttaattttt |
191 |
Q |
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||||||||||||||||||| |||| |||||||||| |||| |||| |
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| T |
1177660 |
ttaaatgtaattttgatcctcctattttcaattttattaaatttt |
1177616 |
T |
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