View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8641_low_20 (Length: 231)
Name: NF8641_low_20
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10289048 - 10288832
Alignment:
| Q |
1 |
atgattatcacacaaattggattatagtagcctaattgatatagttttgtagatggagtattgcatgaatataggcttttgagtgacactcctccacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10289048 |
atgattatcacacaaattggattatagtagcctaattgatatagttttgtagatggagtattgcatgaatataggcttttgagtgacactcctccacatg |
10288949 |
T |
|
| Q |
101 |
gtctcactcaaaagcataaacatctacattgacttctttaacattacttacatccactttgcattctcaacttcactcacatcgacgttattattaatga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10288948 |
gtctcactcaaaagcatgaacatctacattgacttctttaacattactcacatccacattgcattctcaacttcactcacatcgacgttattattaatga |
10288849 |
T |
|
| Q |
201 |
attgatctgatttcatc |
217 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
10288848 |
attgatctaatttcatc |
10288832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 9748504 - 9748575
Alignment:
| Q |
1 |
atgattatcacacaaattggattatagtagcctaattgatatagttttgtagatggagtattgcatgaatat |
72 |
Q |
| |
|
||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9748504 |
atgatcattacacaaattggactatagcagcctaattgatatagttttgtagatggagtattgcattaatat |
9748575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 10297509 - 10297463
Alignment:
| Q |
67 |
gaatataggcttttgagtgacactcctccacatggtctcactcaaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10297509 |
gaatataggcttttgagtgacactcatccacatggtctcactcaaaa |
10297463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 10297403 - 10297350
Alignment:
| Q |
175 |
actcacatcgacgttattattaatgaattgatctgatttcatctcactcgacca |
228 |
Q |
| |
|
||||||||| || |||||| ||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
10297403 |
actcacatccacattattaataatgaattgatctgatatcatctctctcaacca |
10297350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University