View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8641_low_23 (Length: 213)
Name: NF8641_low_23
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 27145280 - 27145099
Alignment:
| Q |
18 |
gaaagaagatgacaacgacaccaaagatgaagtagcaaggcaacctctggattcagctatttgtcccaaattgttaagaaatactaaaccaatagttgca |
117 |
Q |
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| T |
27145280 |
gaaagaagacgacagagacaccaaagatgaagtagcaaggcagcctctggattcagctatttgtcccaaattgttaagaaatactaaaccaattgttgca |
27145181 |
T |
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| Q |
118 |
ccnnnnnnntagacaaagaaatataaccagaaatttattcttctcaacattaacttcactccaatttcttccataacaccaa |
199 |
Q |
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| T |
27145180 |
ccaaaaaaatagacaaagaaatataaccagaaatttattcttctcaacattaacttcactcctatttcttccataacaccaa |
27145099 |
T |
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Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 27160709 - 27160529
Alignment:
| Q |
19 |
aaagaagatgacaacgacaccaaagatgaagtagcaaggcaacctctggattcagctatttgtcccaaattgttaagaaatactaaaccaatagttgcac |
118 |
Q |
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|||| ||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
27160709 |
aaagcagaagacaaagacaccaaagatgaagtagcagaacaacctcttgattcagctatttgtcccaaattgttaagaaacaccaaaccaatagttgcac |
27160610 |
T |
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| Q |
119 |
cnnnnnnntagacaaagaaatataaccagaaatttattcttctcaacattaacttcactccaatttcttccataacaccaa |
199 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27160609 |
caaaaaaatatacaaagaaatataaccagaaatttattcttctcaacattaacttcactcctatttcttccataacaccaa |
27160529 |
T |
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