View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8641_low_3 (Length: 480)
Name: NF8641_low_3
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 43227294 - 43227624
Alignment:
| Q |
1 |
cataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaag |
100 |
Q |
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| T |
43227294 |
cataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttgacaaag |
43227393 |
T |
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| Q |
101 |
aaaaggaaaatgcttaacttgtacattcgactcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacatga |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227394 |
aaaaggaaaatgcttaacttatacattcgactcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacatga |
43227493 |
T |
|
| Q |
201 |
accnnnnnnncacaaaatgcagatttaattcaagggagaaataaacatgtttataataagttgttaatgggatgttatacatgnnnnnnnntaagcttat |
300 |
Q |
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| T |
43227494 |
accaaaaaaacacaaaatgcagatttaattcaagggagaaataaacatgtttctaatatgttgttaatgggatgttatacatg-aaaaaaataagcttat |
43227592 |
T |
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| Q |
301 |
tagaagtttaattatactaaatgggctaccat |
332 |
Q |
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| T |
43227593 |
tagaagtttaattatactaaatgggctaccat |
43227624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 392 - 464
Target Start/End: Original strand, 43227684 - 43227756
Alignment:
| Q |
392 |
gtatgaattgcactttaatctatctattttaatataacaattgactttaagtcgtcaatttaagtaaaaaatg |
464 |
Q |
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| T |
43227684 |
gtatgaattgcactttaatctatctattttaatataacaattgactttaagtcgtcaatttaagtaaaaaatg |
43227756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 43236803 - 43237082
Alignment:
| Q |
2 |
ataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaaga |
101 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||| | || |||||| ||||| |||| ||||||||||||||||| |||| | | |
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| T |
43236803 |
ataatggagaaaaaacaacttgcccactcaaatatccttctatcttcgtaagggacaccgtagtactttgggacataagtaaaagccaaattaatgacaa |
43236902 |
T |
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| Q |
102 |
aaaggaaaatgcttaacttgtacattcgac---tcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacat |
198 |
Q |
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||| ||||||||||||||| ||| | ||| || | |||||||||||||||||| |||| || |||| ||||||||| |||||| ||| |||||||| |
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| T |
43236903 |
aaaataaaatgcttaacttgaacagtggacccaacaaggccattgatagatagtcacgacctaaattcaaggaaagtagtcaaattagagccaaatacat |
43237002 |
T |
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| Q |
199 |
gaacc---------nnnnnnncacaaaatgcagatttaattcaagggagaaataaacatgtttataataagttgttaatg |
269 |
Q |
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|||| ||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||| |
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| T |
43237003 |
aaaccaaaaaacaaaaaaaaacacaaaatgcagatttaattcaagggaaaattaaacatgtttataatatggtgttaatg |
43237082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 43244980 - 43245165
Alignment:
| Q |
1 |
cataatggagaaaaaaca-actgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaa |
99 |
Q |
| |
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|||||||||||||||| | ||| || ||||||||||||||| |||||| |||| ||||| |||||||||||| |||||||||||||||||||| | |
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| T |
43244980 |
cataatggagaaaaaaaagactaatgaactcaaatttccttcgatcttcttgaggaacaccgtagtacattggaatataagtaaaagccaacttaatgac |
43245079 |
T |
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| Q |
100 |
gaaaaggaaaatgcttaacttgtacattcgactcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaatta |
185 |
Q |
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||||| ||||||||||||| | ||||||| || |||||||||||||||||| |||| || |||| ||||||||||||||| |
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| T |
43245080 |
aaaaagcaaaatgcttaactggagtattcgacccagagccattgatagatagtcactacctaaattcaagtaaagtagtaaaatta |
43245165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 393 - 463
Target Start/End: Original strand, 43237199 - 43237269
Alignment:
| Q |
393 |
tatgaattgcactttaatctatctattttaatataacaattgactttaagtcgtcaatttaagtaaaaaat |
463 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||| | |||||||||||| |||||| |
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| T |
43237199 |
tatgaattgcactaaaatctatctattttaatataacaattaactttaatttgtcaatttaagtcaaaaat |
43237269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 43237098 - 43237135
Alignment:
| Q |
292 |
taagcttattagaagtttaattatactaaatgggctac |
329 |
Q |
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| T |
43237098 |
taagcttattagaagtttaattatattaaatgggctac |
43237135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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