View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8641_low_4 (Length: 454)

Name: NF8641_low_4
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8641_low_4
NF8641_low_4
[»] scaffold0197 (2 HSPs)
scaffold0197 (16-257)||(17389-17630)
scaffold0197 (258-454)||(16735-16931)
[»] chr8 (22 HSPs)
chr8 (16-257)||(10687344-10687585)
chr8 (16-257)||(33036013-33036254)
chr8 (16-257)||(35742155-35742396)
chr8 (16-254)||(26298148-26298386)
chr8 (16-254)||(26311405-26311643)
chr8 (16-257)||(18868750-18868991)
chr8 (16-257)||(26401430-26401671)
chr8 (258-454)||(10686690-10686886)
chr8 (258-454)||(35742854-35743050)
chr8 (259-454)||(18868096-18868291)
chr8 (258-454)||(26298847-26299034)
chr8 (23-228)||(25683051-25683256)
chr8 (23-255)||(4814058-4814290)
chr8 (23-255)||(16754092-16754324)
chr8 (258-343)||(26400887-26400972)
chr8 (23-228)||(28331039-28331244)
chr8 (121-225)||(40827427-40827531)
chr8 (23-255)||(28893881-28894113)
chr8 (128-192)||(15947842-15947906)
chr8 (418-454)||(4814904-4814940)
chr8 (418-454)||(16754938-16754974)
chr8 (418-454)||(28893231-28893267)
[»] chr7 (23 HSPs)
chr7 (16-257)||(21641456-21641697)
chr7 (16-257)||(24264403-24264644)
chr7 (16-257)||(16881693-16881934)
chr7 (16-257)||(18410423-18410664)
chr7 (258-454)||(24263749-24263945)
chr7 (258-454)||(21986385-21986581)
chr7 (258-452)||(16882392-16882586)
chr7 (16-257)||(21985685-21985926)
chr7 (258-454)||(24272326-24272522)
chr7 (16-257)||(9188225-9188466)
chr7 (258-454)||(18411122-18411318)
chr7 (258-454)||(9187571-9187767)
chr7 (16-257)||(24272984-24273226)
chr7 (107-257)||(12404827-12404977)
chr7 (258-452)||(21642155-21642346)
chr7 (16-112)||(12398521-12398617)
chr7 (23-255)||(3321620-3321852)
chr7 (23-255)||(7073168-7073400)
chr7 (23-255)||(25408531-25408763)
chr7 (23-255)||(25403774-25404006)
chr7 (158-213)||(5071564-5071619)
chr7 (418-454)||(3322466-3322502)
chr7 (418-454)||(44012209-44012245)
[»] chr5 (24 HSPs)
chr5 (16-257)||(31400072-31400313)
chr5 (16-257)||(33769805-33770046)
chr5 (16-257)||(27446589-27446830)
chr5 (16-257)||(28805802-28806043)
chr5 (16-257)||(37559673-37559914)
chr5 (16-257)||(28833825-28834066)
chr5 (16-257)||(43593887-43594128)
chr5 (16-257)||(43626681-43626922)
chr5 (258-454)||(33788821-33789017)
chr5 (258-454)||(28805148-28805344)
chr5 (258-454)||(31399418-31399614)
chr5 (258-454)||(43594586-43594782)
chr5 (258-454)||(43627380-43627576)
chr5 (258-454)||(27447288-27447484)
chr5 (258-454)||(37559028-37559215)
chr5 (258-454)||(28835767-28835963)
chr5 (76-257)||(24558664-24558845)
chr5 (76-257)||(24599696-24599877)
chr5 (258-454)||(24558010-24558206)
chr5 (258-454)||(24599042-24599238)
chr5 (23-233)||(25450896-25451106)
chr5 (162-257)||(30102726-30102821)
chr5 (142-227)||(31301224-31301309)
chr5 (418-454)||(25447955-25447991)
[»] chr4 (14 HSPs)
chr4 (16-257)||(18857342-18857583)
chr4 (16-257)||(3791213-3791454)
chr4 (258-454)||(18858041-18858237)
chr4 (16-257)||(16627072-16627313)
chr4 (258-454)||(9226827-9227023)
chr4 (16-257)||(5144676-5144915)
chr4 (258-454)||(5145373-5145569)
chr4 (258-454)||(16626419-16626614)
chr4 (16-125)||(9227544-9227653)
chr4 (186-257)||(9227481-9227552)
chr4 (23-201)||(15315488-15315666)
chr4 (23-192)||(16637341-16637510)
chr4 (23-201)||(4568514-4568692)
chr4 (366-394)||(33655986-33656014)
[»] chr2 (20 HSPs)
chr2 (16-257)||(19346044-19346285)
chr2 (258-454)||(19346743-19346939)
chr2 (17-257)||(39484524-39484764)
chr2 (16-256)||(31057725-31057964)
chr2 (16-257)||(39486291-39486532)
chr2 (258-454)||(31058423-31058619)
chr2 (258-451)||(39485640-39485833)
chr2 (258-454)||(39485214-39485398)
chr2 (37-258)||(31134663-31134883)
chr2 (23-227)||(22714066-22714270)
chr2 (23-201)||(39685418-39685596)
chr2 (23-188)||(2739389-2739554)
chr2 (23-189)||(17942004-17942170)
chr2 (23-201)||(20051594-20051771)
chr2 (411-454)||(25393504-25393547)
chr2 (418-454)||(2738672-2738708)
chr2 (418-454)||(17934551-17934587)
chr2 (418-454)||(20052439-20052475)
chr2 (418-454)||(22714912-22714948)
chr2 (418-454)||(39684714-39684750)
[»] chr3 (31 HSPs)
chr3 (16-257)||(32477106-32477347)
chr3 (16-257)||(2675300-2675541)
chr3 (16-257)||(22171388-22171629)
chr3 (16-254)||(1307637-1307875)
chr3 (16-257)||(8513860-8514101)
chr3 (16-257)||(16256835-16257076)
chr3 (258-452)||(2674648-2674842)
chr3 (258-454)||(22170734-22170930)
chr3 (258-452)||(8514559-8514753)
chr3 (258-452)||(32477805-32477999)
chr3 (258-454)||(1308336-1308532)
chr3 (258-454)||(3325964-3326148)
chr3 (131-257)||(3326606-3326732)
chr3 (23-255)||(10609605-10609837)
chr3 (23-255)||(22622957-22623189)
chr3 (16-91)||(3326735-3326810)
chr3 (23-255)||(10900126-10900358)
chr3 (23-255)||(47879721-47879953)
chr3 (23-255)||(54191625-54191857)
chr3 (23-255)||(10095638-10095870)
chr3 (23-227)||(16460609-16460813)
chr3 (23-255)||(10202524-10202756)
chr3 (17-110)||(9149586-9149678)
chr3 (418-454)||(6305778-6305814)
chr3 (418-454)||(10096484-10096520)
chr3 (418-454)||(10203370-10203406)
chr3 (418-454)||(10610451-10610487)
chr3 (418-454)||(10899476-10899512)
chr3 (418-454)||(16459931-16459967)
chr3 (418-454)||(29911631-29911667)
chr3 (418-454)||(54190975-54191011)
[»] scaffold0259 (1 HSPs)
scaffold0259 (16-257)||(465-706)
[»] chr6 (17 HSPs)
chr6 (16-257)||(14740652-14740892)
chr6 (16-257)||(33334156-33334397)
chr6 (258-454)||(33333502-33333698)
chr6 (258-454)||(14739998-14740194)
chr6 (16-193)||(24714559-24714730)
chr6 (258-454)||(24433746-24433942)
chr6 (23-255)||(13881856-13882088)
chr6 (23-255)||(35202895-35203127)
chr6 (128-201)||(17691789-17691862)
chr6 (130-255)||(25944786-25944911)
chr6 (135-201)||(22347917-22347983)
chr6 (23-114)||(22345832-22345923)
chr6 (415-454)||(17692527-17692566)
chr6 (418-454)||(13881206-13881242)
chr6 (418-454)||(22348653-22348689)
chr6 (418-454)||(25944136-25944172)
chr6 (418-454)||(35203741-35203777)
[»] chr1 (14 HSPs)
chr1 (258-454)||(41395716-41395912)
chr1 (16-257)||(47702117-47702357)
chr1 (16-257)||(47101087-47101328)
chr1 (258-454)||(19369111-19369307)
chr1 (101-257)||(41395102-41395258)
chr1 (16-105)||(41392218-41392307)
chr1 (23-255)||(9524845-9525077)
chr1 (23-201)||(2396087-2396265)
chr1 (17-207)||(34689683-34689874)
chr1 (17-207)||(34694211-34694402)
chr1 (77-257)||(7155150-7155329)
chr1 (418-454)||(2396933-2396969)
chr1 (418-454)||(9524195-9524231)
chr1 (19-87)||(41131045-41131112)
[»] scaffold0078 (2 HSPs)
scaffold0078 (16-257)||(33806-34046)
scaffold0078 (258-449)||(34503-34697)
[»] scaffold0006 (2 HSPs)
scaffold0006 (286-454)||(1-169)
scaffold0006 (258-454)||(8129-8325)
[»] scaffold0256 (1 HSPs)
scaffold0256 (418-454)||(18793-18829)
[»] scaffold0209 (1 HSPs)
scaffold0209 (418-454)||(822-858)


Alignment Details
Target: scaffold0197 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 17630 - 17389
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17630 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 17531  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17530 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 17431  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17430 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 17389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 16931 - 16735
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16931 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 16832  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16831 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 16735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 10687585 - 10687344
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10687585 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 10687486  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10687485 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 10687386  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10687385 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 10687344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 33036254 - 33036013
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33036254 catcaagatatcatccacatataaaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 33036155  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33036154 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttggacttgtcct 33036055  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33036054 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 33036013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 35742155 - 35742396
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |    
T  35742155 catcaagatatcatccacatatagaagaagatagagaataactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 35742254  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35742255 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 35742354  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35742355 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 35742396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 26298148 - 26298386
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  26298148 catcaagatatcatccacatataaaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 26298247  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26298248 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 26298347  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctctt 254  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  26298348 ccacaaaacctttcggttgctccatgtagattgtctctt 26298386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 26311405 - 26311643
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  26311405 catcaagatatcatccacatataaaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 26311504  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26311505 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 26311604  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctctt 254  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  26311605 ccacaaaacctttcggttgctccatgtagattgtctctt 26311643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 18868991 - 18868750
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  18868991 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccccttctcacaaaaccg 18868892  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  18868891 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacctatacaaagatttcttcaaaagacacaccttggacttgtcct 18868792  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  18868791 ccacagaaccttccggttgctccatgtagattgtctcttcaa 18868750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 26401671 - 26401430
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||  |    
T  26401671 catcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatatacacgcaagaatcatatccgcttctcacaaaactg 26401572  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  26401571 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaactcatacaaagatttcttcaaaagacataccttagacttgtcct 26401472  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  26401471 ccacaaaaccttctggttgctccatgtagattgtctcttcaa 26401430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 10686886 - 10686690
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10686886 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttctacatcttcttcttcttca 10686787  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10686786 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 10686690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 35742854 - 35743050
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35742854 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 35742953  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35742954 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccattcgggtctcatcaa 35743050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 259 - 454
Target Start/End: Complemental strand, 18868291 - 18868096
Alignment:
Q  259 tctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttcat 358  Q
    ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  18868291 tctctatctctagccaagagatactccggatccactactggttgagttccacttgtatctgatgttgaagcttcatcttctacatcttcttcttcttcat 18868192  T
Q  359 ttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  18868191 ttggaagctccacctcaaactgagttttctccaccatagtttccggtactaaagtctctaggtctttacacttcatccccatacgggtctcatcaa 18868096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 26298847 - 26299034
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||| |||||| |||||||||||         |||||||||||||    
T  26298847 ttctctatctctagccaagagataatccggatccactaccggttgtgttccacttgtattcgatgttgaagcttcatc---------ttcttcttcttca 26298937  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  26298938 tttggaagctccacctcaaactgagttttatccaccattgtttccggtactaaagtctctaggtctttacacttcatccccatacgggtctcatcaa 26299034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 25683256 - 25683051
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || |||||||||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  25683256 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 25683157  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  25683156 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 25683057  T
Q  223 accttc 228  Q
    ||||||    
T  25683056 accttc 25683051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 4814058 - 4814290
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  4814058 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 4814157  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  4814158 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 4814257  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  4814258 accttctggttgttgcatatagatagtttcttc 4814290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 16754092 - 16754324
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || |||||||||||||||||||||||| || |  ||| |||||| ||||||   |||||   ||||||||||||| | | ||  |    
T  16754092 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactgtcatagttgcttctcacaaaaccagccttta 16754191  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  16754192 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 16754291  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  16754292 accttctggttgttgcatatagatagtttcttc 16754324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 26400972 - 26400887
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacat 343  Q
    |||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  26400972 ttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatcttctacat 26400887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 28331244 - 28331039
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  28331244 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 28331145  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  28331144 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 28331045  T
Q  223 accttc 228  Q
    ||||||    
T  28331044 accttc 28331039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 40827531 - 40827427
Alignment:
Q  121 caaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccaca 220  Q
    |||||||||||||||||||  || |||||||| |||||||||||||||||||| ||| |||||| ||||||||| |  || |||||||||||||||||||    
T  40827531 caaaataaactcatcaaactaacaataccatttcctagggctttgcttcaacctatagaaagatatcttcaaaatatgcaacttagacttgtcctccaca 40827432  T
Q  221 aaacc 225  Q
    |||||    
T  40827431 aaacc 40827427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 28894113 - 28893881
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||  ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||       
T  28894113 atatcatttacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagcctttt 28894014  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || | |||    
T  28894013 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctataaa 28893914  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  28893913 accttctggttgttgcatatagatagtttcttc 28893881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 15947906 - 15947842
Alignment:
Q  128 aactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 192  Q
    ||||||||||||||| || |||| ||||| || ||||||||||||| ||| ||||||||||||||    
T  15947906 aactcatcaaaccgaagaaaccactgccttggactttgcttcaacctatagaaagatttcttcaa 15947842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 4814904 - 4814940
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  4814904 aggtctttgcacttcatccccatgcgggtctcatcaa 4814940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 16754938 - 16754974
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  16754938 aggtctttgcacttcatccccattcgggtctcatcaa 16754974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 28893267 - 28893231
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  28893267 aggtctttgcacttcatccccatgcgggtctcatcaa 28893231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 21641456 - 21641697
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21641456 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 21641555  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21641556 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 21641655  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21641656 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 21641697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 24264644 - 24264403
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24264644 catcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 24264545  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24264544 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 24264445  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24264444 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 24264403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 16881693 - 16881934
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  16881693 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatacccgcttctcacaaaaccg 16881792  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16881793 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 16881892  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16881893 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 16881934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 18410423 - 18410664
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  ||    
T  18410423 catcaagatatcatccacatataaaagaaggtagagaatgactttctcattcttctttaacatgtacacacaagaatcatatccgcttctcacaaagccg 18410522  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  18410523 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcgt 18410622  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18410623 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 18410664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 24263945 - 24263749
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24263945 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttctacatcttcttcttcttca 24263846  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263845 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 24263749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 21986385 - 21986581
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21986385 ttctctatctctagccaatacatactcaggatccactatcggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 21986484  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21986485 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgagtctcatcaa 21986581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 258 - 452
Target Start/End: Original strand, 16882392 - 16882586
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16882392 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttctacatcttcttcttcttca 16882491  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatc 452  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  16882492 tttggaagctccacctcaaactgagttctctccaccatagtttccggtacttgagtctctaagtctttacacttcatccccatctgggtctcatc 16882586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 21985685 - 21985926
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| ||    
T  21985685 catcaagatatcatccacatataaaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaagaatcatacccgcttctcacaaaaccg 21985784  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||| |    
T  21985785 gtcttcaaaagaaattcatgaaaccgacgatagcattgcctagggctttgcttcaaccgatacaaagatttctttaaaaaacataccttagacttgtctt 21985884  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
     || ||||||||| |||| |||||||||||||||||||||||    
T  21985885 tcaaaaaaccttctggtttctccatgtagattgtctcttcaa 21985926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 24272522 - 24272326
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||| | ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24272522 ttctctatctttagccaagagataatcaagatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcatcttcttcttca 24272423  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  24272422 tttggaagctccacctcaaactgagttttctccaccattgtttccggtacttaagtctttaggtctttacacttcatccccatacgggtctcatcaa 24272326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 9188466 - 9188225
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||| ||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||    
T  9188466 catcaagatatcatcaacatataaaagaaggtagaaaataactttctcactcctcttcaacatgtacacacaagaatcatatctgcttctcacaaaaccg 9188367  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
     ||| ||||| ||| |||||||||  || |||| |||||||| | ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  9188366 atcttcaaaagaaattcatcaaacttacaatacaattgcctatgactttgtttcaatccatacaaagatttctttaaaagacataccttagacttgtcct 9188267  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  9188266 ccacaaaaccttccgtttgctccatgtagattgtctcttcaa 9188225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 18411122 - 18411318
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18411122 ttctctatctctagccaagagataatccggatccactacgggttgagttccacttgtatccaatgtcgaagcttcatcttctacatcttcttcttcttca 18411221  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  18411222 tttggaagctccacctcaaattgagttttctccaccattgtttccggtactaaagtctctaggtctttacacttcatccccatacgggtctcatcaa 18411318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 9187767 - 9187571
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| | ||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9187767 ttctctatctctagtcaagagataatccggatccactaccggttgagttccacttgtatccgacgtcgaagcttcatcttctacatcttcttcttcttca 9187668  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||| |||||||||||||    
T  9187667 tttggaagctctacctcaaactgagttttctccaccattgtttccggtactaaagtctctaggtctttactcttcatccccatacgggtctcatcaa 9187571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 24273226 - 24272984
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaa-tgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatc 114  Q
    ||||||||||||||| ||||||| |||||| || | || ||| ||||||| || |||||||||||||||||||| |||||||||||||||||| |||| |    
T  24273226 catcaagatatcatcaacatataaaagaagataaaaaaatgaatttctcattcctcttcaacatgtacacacaataatcatatccgcttctcataaaacc 24273127  T
Q  115 ggtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcc 214  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  24273126 ggtcttcaaaagaaattcatcaaaccgacgataccattgcctaagactttacttcaacccatacaaagatttcttcaatagatataccttagacttgtcc 24273027  T
Q  215 tccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||| |||| ||||||||||||||||||||||||||||    
T  24273026 tccacaaaatcttctggttgctccatgtagattgtctcttcaa 24272984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 12404827 - 12404977
Alignment:
Q  107 acaaaatcggtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttag 206  Q
    |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12404827 acaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggcttttcttcaacccatacaaagatttcttcaaaagacacaccttag 12404926  T
Q  207 acttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12404927 acttgtcctccataaaaccttccggttgctccatgtagattgtctcttcaa 12404977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 258 - 452
Target Start/End: Original strand, 21642155 - 21642346
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| || |||| |||||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  21642155 ttctctatctctagccaagagataatccggattcactaccggttgagtttcatttgtatc-gatgttgaagcttcatcttctacatcttcttcttcttca 21642253  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatc 452  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||| |||||||||| |||||||||||    
T  21642254 tttggaagctccacctcaaactgagttttctccaccat--tttccggtactaaagtctctaggtctttacacatcatccccatacgggtctcatc 21642346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 12398521 - 12398617
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaa 112  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12398521 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaa 12398617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 3321620 - 3321852
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || |||||||||||||||| |||| || || |  ||| |||||| ||||||   |||||   ||||||||||||| | | ||  |    
T  3321620 atatcatctacataaaggagaaggtagagaatgattttcccattccttctcatcatgtaaacacaactgtcatagttgcttctcacaaaaccagccttta 3321719  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||| || || |  ||||| || |||||    
T  3321720 ctaggaactcatcaaaccgacgataccattgccttggactttgcttcaacccatacaaagatttcttcaacaaacatacttttgtattgtcttctacaaa 3321819  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  3321820 accttctggttgttgcatatagatagtttcttc 3321852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 7073400 - 7073168
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| |||||| | |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  7073400 atatcatctacataaagaagatgatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 7073301  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || ||||||||||| ||||||||| |||||||||| | |||||| || |  ||||| || |||||    
T  7073300 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaatccatacaaatatttcttcaacaaacacacttttgtattgtcttctacaaa 7073201  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  7073200 accttctggttgttgcatatagatagtttcttc 7073168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 25408763 - 25408531
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||| ||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  25408763 atatcatctacataaaggagaagatagataatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 25408664  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| |||||||| |||||||||||||||||||  ||||||||||| | |||||| || |  ||||| || || ||    
T  25408663 ctaggaactcatcaaaccgacgataccactgcctaggactttgcttcaacccatacatggatttcttcaacaaacacacttttgtattgtcttctacgaa 25408564  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  25408563 accttctggttgttgcatatagatagtttcttc 25408531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 25404006 - 25403774
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||| ||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  25404006 atatcatctacataaaggagaagatagataatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 25403907  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||  ||||||||||| | |||||| || |  ||||| || || ||    
T  25403906 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacatggatttcttcaacaaacacacttttgtattgtcttctacgaa 25403807  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  25403806 accttctggttgttgcatatagatagtttcttc 25403774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 5071564 - 5071619
Alignment:
Q  158 gggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtc 213  Q
    |||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||    
T  5071564 gggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtc 5071619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 3322466 - 3322502
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  3322466 aggtctttgcacttcatccccatgcgggtctcatcaa 3322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 44012209 - 44012245
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  44012209 aggtctttgcacttcatccccatgcgggtctcatcaa 44012245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 31400313 - 31400072
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31400313 catcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 31400214  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31400213 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 31400114  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31400113 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 31400072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 33769805 - 33770046
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33769805 catcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 33769904  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33769905 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 33770004  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33770005 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 33770046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 27446589 - 27446830
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27446589 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 27446688  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27446689 gtcttcaaaagaaattcatcaaaacgacgataccattgcctagggctttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcct 27446788  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27446789 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 27446830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 28806043 - 28805802
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  28806043 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagagtcatatccgcttctcacaaaaccg 28805944  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28805943 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacgcaccttagacttgtcct 28805844  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28805843 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 28805802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 37559914 - 37559673
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37559914 catcaagatgtcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 37559815  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37559814 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacgccttagacttgtcct 37559715  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  37559714 ccacaaaaccttctggttgctccatgtagattgtctcttcaa 37559673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 28833825 - 28834066
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  28833825 catcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 28833924  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |    
T  28833925 gtcttcaaaagaaattcatcaaaccgacgatatcattgcctagggctttgcttcaacccatacaaagatttcttcaaaagatataccttagacttgtcat 28834024  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28834025 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 28834066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 43593887 - 43594128
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43593887 catcaagatatcatccacatataaaagaagatagagaatgactttctcacttttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 43593986  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43593987 gtcttcaaaagaaattcatcaaaacgacgataccattgcgtagggctttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcct 43594086  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43594087 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 43594128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 43626681 - 43626922
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43626681 catcaagatatcatccacatataaaagaagatagagaatgactttctcacttttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 43626780  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43626781 gtcttcaaaagaaattcatcaaaacgacgataccattgcgtagggctttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcct 43626880  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43626881 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 43626922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 33788821 - 33789017
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33788821 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 33788920  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33788921 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 33789017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 28805344 - 28805148
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28805344 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 28805245  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28805244 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatcctcatccgggtctcatcaa 28805148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 31399614 - 31399418
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31399614 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 31399515  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31399514 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaagtctttacacttcatccccatccgggtctcatcaa 31399418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 43594586 - 43594782
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43594586 ttctctatctctagccaatagatactcaggatccactaccggttgagttccactagtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 43594685  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  43594686 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttgcacttcatccccatacgggtctcatcaa 43594782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 43627380 - 43627576
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43627380 ttctctatctctagccaatagatactcaggatccactaccggttgagttccactagtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 43627479  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  43627480 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttgcacttcatccccatacgggtctcatcaa 43627576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 27447288 - 27447484
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  27447288 ttctctatctctagccaatagatactcaggatccactaccggttgagttccactagtatccgatgttgaagcttcatcttctacatcttcttcttcttca 27447387  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  27447388 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatcctcatacgggtctcatcaa 27447484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 37559215 - 37559028
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||         |||||||||    
T  37559215 ttctctatctcttgccaatagatacttaggatccaccaccggttgagttccacttgtatccgatatcgaagcttcatcttct---------tcttcttca 37559125  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37559124 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 37559028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 28835767 - 28835963
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||    
T  28835767 ttctctatctctagccaaaagataatcaggatccactaccggttgagtttcacttgtatccgatgtcgaagcttcatcttctacatcatttttttcttca 28835866  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  28835867 tttggaagctccacctcaaactgagtttcctccaccattgttttcggtactaaagtctctaggtctttacacttcatccccatacgggtctcatcaa 28835963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 76 - 257
Target Start/End: Complemental strand, 24558845 - 24558664
Alignment:
Q  76 catgtacacacaagaatcatatccgcttctcacaaaatcggtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaaccca 175  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  24558845 catgtacacacatgaatcatatccgcttctcacaaaatcgatcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttggttcaaccca 24558746  T
Q  176 tacaaagatttcttcaaaagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    || |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24558745 tataaagatttattcaaaagacataccttagacttgtcctccacaaaaccttctggttgctccatgtagattgtctcttcaa 24558664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 76 - 257
Target Start/End: Complemental strand, 24599877 - 24599696
Alignment:
Q  76 catgtacacacaagaatcatatccgcttctcacaaaatcggtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaaccca 175  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  24599877 catgtacacacatgaatcatatccgcttctcacaaaatcgatcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttggttcaaccca 24599778  T
Q  176 tacaaagatttcttcaaaagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    || |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24599777 tataaagatttattcaaaagacataccttagacttgtcctccacaaaaccttctggttgctccatgtagattgtctcttcaa 24599696  T

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Target: chr5; HSP #19
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 24558206 - 24558010
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||  ||||||    
T  24558206 ttctctatctctatccaaaagataatcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttcttcatcatctttatcttca 24558107  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||| ||| ||| ||||||||| ||||||||||||  |||||||||||||||||||||||||||||| || ||||||||||    
T  24558106 tttggaagctccacctcaaaatgattttcctccaccattgtttccggtactaaagtctctaggtctttacacttcatccccatacgagtctcatcaa 24558010  T

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Target: chr5; HSP #20
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 24599238 - 24599042
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||  ||||||    
T  24599238 ttctctatctctatccaaaagataatcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttcttcatcatctttatcttca 24599139  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||| ||| ||| ||||||||| ||||||||||||  |||||||||||||||||||||||||||||| || ||||||||||    
T  24599138 tttggaagctccacctcaaaatgattttcctccaccattgtttccggtactaaagtctctaggtctttacacttcatccccatacgagtctcatcaa 24599042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 25451106 - 25450896
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| | ||| || |||||||||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  25451106 atatcatctagataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 25451007  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  |||| |||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  25451006 ctaggaactaatcaaaccgacgataccactaccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 25450907  T
Q  223 accttccggtt 233  Q
    |||||| ||||    
T  25450906 accttctggtt 25450896  T

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Target: chr5; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 30102726 - 30102821
Alignment:
Q  162 tttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    |||| |||||| |||||||| ||||||||||||||| |||| |||| || ||||| ||||||||||  |||||||| ||||| |||||||||||||    
T  30102726 tttgtttcaactcatacaaatatttcttcaaaagacccaccgtagatttatcctctacaaaaccttttggttgctctatgtaaattgtctcttcaa 30102821  T

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Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 31301224 - 31301309
Alignment:
Q  142 acgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaaacctt 227  Q
    |||||| |||||||| ||  |||| |||||  | ||||| |||||||||||||||||||||||||| ||||| |||| ||||||||    
T  31301224 acgatatcattgccttggattttgtttcaattcttacaatgatttcttcaaaagacacaccttagatttgtcttccataaaacctt 31301309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 25447991 - 25447955
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  25447991 aggtctttgcacttcatccccatgcgggtctcatcaa 25447955  T

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Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 18857342 - 18857583
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18857342 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 18857441  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18857442 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 18857541  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18857542 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 18857583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 3791454 - 3791213
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| ||    
T  3791454 catcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaagaatcatatccgcttcttacaaaaccg 3791355  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3791354 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttacttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 3791255  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||| |||||||||||||||||||||||||||| |||||||||    
T  3791254 ccaaaaaaccttccggttgctccatgtagattttctcttcaa 3791213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 18858041 - 18858237
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18858041 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttctacatcttcttcttcttca 18858140  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18858141 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 18858237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 16627313 - 16627072
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||| ||||||| |||||| |||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  16627313 catcaagatatcatcaacatataaaagaagatagagaatgactctctcacccctctgcaacatgtacacacaagaatcatatccgcttctcaaaaaatcg 16627214  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16627213 gtcttcaaaagaaattcatcaaaccgacgataccattgccttgggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 16627114  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    | |||||||||||| ||||||||||||||||||||| |||||    
T  16627113 ctacaaaaccttccagttgctccatgtagattgtcttttcaa 16627072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 9227023 - 9226827
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9227023 ttctctatctctagccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatctttttcttcttca 9226924  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  9226923 tttggaagctccacctcaaattgagttttctccaccatagtttccggtacttgggtctctaggtctttacacttcatccccatacgggtctcatcaa 9226827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 5144676 - 5144915
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  5144676 catcaagatatcatccacatataaaagaaggtagagaatgactttctcacccttcttcaacatgtacacacaagaatcttatccgcttctcacaaaaccg 5144775  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    | || ||||| ||| ||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |    
T  5144776 ggcttcaaaagaaattcatcaaactgatgataccattgcccagggatttgcttcaacccatacaaagatttctttaaaagacataccttagacttgtctt 5144875  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
     ||||||||||||||||||||||||||  |||||||||||||    
T  5144876 tcacaaaaccttccggttgctccatgt--attgtctcttcaa 5144915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 5145373 - 5145569
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  5145373 ttctctatctctagccaagagagaatcaggatccactaccggttgagttccacttgtatctgatgtcgaagcttcatcttctacatcatcttcttcttca 5145472  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
     ||||||||||||||||||||||||||| ||||||||| |||||||||||   ||||||||||||||||||||||||||| || |||||||||||||    
T  5145473 cttggaagctccacctcaaactgagtttcctccaccattgtttccggtaccaaagtctctaggtctttacacttcatccctatacgggtctcatcaa 5145569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 16626614 - 16626419
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||    
T  16626614 ttctctatctctagccaagagataatcaggatccactaccggttgagttccactagtatccgatgttgaagcttcatcttctacatcatcttcttcttca 16626515  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||| ||||||||| |||| | ||||| |||||||||||||||| |||||||||||||| |||||||||||||    
T  16626514 tttggaagctccacctcaaactgagtttcctccaccattgtttacagtactagagtctctaggtcttt-cacttcatccccatacgggtctcatcaa 16626419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 9227653 - 9227544
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||    
T  9227653 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttttccaacatgtacacacaagaatcatatccgcttctcacaaaaccg 9227554  T
Q  116 gtctccaaaa 125  Q
    |||| |||||    
T  9227553 gtcttcaaaa 9227544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 9227552 - 9227481
Alignment:
Q  186 tcttcaaaagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  9227552 tcttcaaaagacacaccttagacttgtcctccacaaaaccttctagttgctccatgtagattgtctcttcaa 9227481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 15315666 - 15315488
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || |||||||||||||| ||||||||| || |  ||| |||||| ||| ||  ||||||   |||||||||||||   | ||  |    
T  15315666 atatcatctacataaaggagaaggtagagaataactttctcattccttctcatcatgtaaacataactatcatagttgcttctcacaaaactagccttta 15315567  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacac 201  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||    
T  15315566 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacac 15315488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 16637510 - 16637341
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    ||||| || ||||| || |||||| ||||||||||||||||| || |  ||| |||||||||||||  ||||||   ||||||||||||| | | ||  |    
T  16637510 atatcttctacataaaggagaaggaagagaatgactttctcattccttctcatcatgtacacacaactatcatagttgcttctcacaaaaccagccttta 16637411  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 192  Q
     ||  |||||||||||| |||||||||| ||||| || ||||| ||||| ||||||||||||||||||||    
T  16637410 caaggaactcatcaaacagacgataccactgccttggactttgattcaatccatacaaagatttcttcaa 16637341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 4568692 - 4568514
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||  |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | |  |  |    
T  4568692 atatcatcaacataaaggagaaaatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagcattta 4568593  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacac 201  Q
      |  ||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||| | ||||||    
T  4568592 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaatatttcttcaacaaacacac 4568514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 394
Target Start/End: Complemental strand, 33656014 - 33655986
Alignment:
Q  366 ctccacctcaaactgagttttctccacca 394  Q
    |||||||||||||||||||||||||||||    
T  33656014 ctccacctcaaactgagttttctccacca 33655986  T

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Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 19346044 - 19346285
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19346044 catcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 19346143  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19346144 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagattttttcaaaagacacaccttagacttgtcct 19346243  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  19346244 ccacaaaaccttccggttgttccatgtagattgtctcttcaa 19346285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 19346743 - 19346939
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19346743 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 19346842  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19346843 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 19346939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 39484524 - 39484764
Alignment:
Q  17 atcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcgg 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||| |||    
T  39484524 atcaagatatcatccacatataaaagaaggtagagaatgactttctcacccatctccaacatgtacacacaagaatcatatctgcttctcacaaaaccgg 39484623  T
Q  117 tctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctc 216  Q
    ||| ||||| ||| |||| ||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39484624 tcttcaaaagaaattcataaaaacaacgataccattgcctaaggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctc 39484723  T
Q  217 cacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  39484724 tacaaaaccttccggttgctccatgtagattgtctcttcaa 39484764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 31057725 - 31057964
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||    
T  31057725 catcaagatatcatccacatataaaagaaggtagagaatgactttc-cacccctcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 31057823  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  31057824 gtcttcaaaagaaattcatcaaaccgacgataccatttcctagggttttgcttcaactcatacaaagatttcttcaaaagacataccttagacttgtcct 31057923  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttca 256  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  31057924 ccacaaaaccttccaattgctccatgtagattgtctcttca 31057964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 39486532 - 39486291
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||||| |     
T  39486532 catcaagatatcatccacatataaaagaagatagagaatgactttcacaaacatcttcaacatgtacacacaagaatcatatccgcttctcacaaaacca 39486433  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  39486432 gtcttcaaaagaaattcatcaaaccgacgatatcattgtctagggctttgcttcaacccatacaaagatatcttcaaaagacatatcttagacttgtcct 39486333  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  39486332 ccacaaaaccttctggttactccatgtagattgtctcttcaa 39486291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 31058423 - 31058619
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  31058423 ttctctatctctagccaaaagataatcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcatctttttcttca 31058522  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||| | | ||  |||||||||||||||||||||||||||||| |||||||||||||    
T  31058523 tttggaagctccacctcaaattgagtttcctccaccattgtttctgatgctaaagtctctaggtctttacacttcatccccatacgggtctcatcaa 31058619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 258 - 451
Target Start/End: Complemental strand, 39485833 - 39485640
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39485833 ttctctatctctagccaagagataatcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcatcttcttcttca 39485734  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcat 451  Q
    ||| ||||||||| |||||||||||||| ||||||||| ||||||||||||  ||||||||||||||| |||||||||| ||| ||| ||||||    
T  39485733 tttcgaagctccatctcaaactgagtttcctccaccattgtttccggtactaaagtctctaggtctttgcacttcatcctcatacggttctcat 39485640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 39485214 - 39485398
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||            ||||||||    
T  39485214 ttctctatctctagccaagagataatcaggatccactaccagttgagttccacttgtatccgatgtcgaagcttcatctt------------cttcttca 39485301  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| ||||| |  ||||||||||    
T  39485302 tttggaagctccacctcaaattgagttttctccaccattgtttccggtactaaagtctctaggtctttacacttcattcccatacatgtctcatcaa 39485398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 37 - 258
Target Start/End: Complemental strand, 31134883 - 31134663
Alignment:
Q  37 tagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctccaaaataaactcatca 136  Q
    |||||||||||||||||||||||| |||  |||||| || ||||||||| || ||||||| |  ||||| |||| | |||||| ||||| ||||||||||    
T  31134883 tagaagaaggtagagaatgactttttcatccttctttaatatgtacacataaaaatcatacctacttcttacaacaccggtcttcaaaagaaactcatca 31134784  T
Q  137 aaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaaaccttccggttgct 236  Q
    ||| || || || |||| || || ||||| |||||| |||||||  |||||||||||||||||| ||| ||||||||||||| |||||||||| ||| ||    
T  31134783 aactgatga-actattgtcttggactttgtttcaacacatacaacaatttcttcaaaagacacatcttggacttgtcctccataaaaccttccagtttct 31134685  T
Q  237 ccatgtagattgtctcttcaat 258  Q
    |||| ||||| |||||||||||    
T  31134684 ccatatagatcgtctcttcaat 31134663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 22714066 - 22714270
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || |||||||||||||| ||||||||| || |  ||| |||||| ||||||   |||||   ||||||||||||| | | ||  |    
T  22714066 atatcatctacataaaggagaaggtagagaataactttctcattccttctcatcatgtaaacacaactgtcatagttgcttctcacaaaaccagccttta 22714165  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  22714166 ctaggaactcatcaaaccgacgataccaatgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 22714265  T
Q  223 acctt 227  Q
    |||||    
T  22714266 acctt 22714270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 39685596 - 39685418
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  39685596 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 39685497  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacac 201  Q
      |  ||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||| | ||||||    
T  39685496 ctaggaactcatcaaaccgacgataccactgctttggactttgcttcaacccatacaaagatttcttcaacaaacacac 39685418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 2739554 - 2739389
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || |||||||||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  2739554 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 2739455  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttct 188  Q
      |  ||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  2739454 ctaggaactcatcataccgacgataccactgccttggactttgcttcaacccatacaaagatttct 2739389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 17942170 - 17942004
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| |   ||  |    
T  17942170 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccaaccttta 17942071  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttctt 189  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  17942070 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttctt 17942004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 20051594 - 20051771
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  20051594 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtagacacaactatcatagttgcttctcacaaaaccagccttta 20051693  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacac 201  Q
      |  ||||||||||||||||||||| | ||||| || ||||||||||||| |||||||| ||||||||| | ||||||    
T  20051694 ctaggaactcatcaaaccgacgatac-actgccttggactttgcttcaaccgatacaaagttttcttcaacaaacacac 20051771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 454
Target Start/End: Original strand, 25393504 - 25393547
Alignment:
Q  411 agtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  25393504 agtctctaggtctttacacttcatccccatacgggtctcatcaa 25393547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 2738708 - 2738672
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  2738708 aggtctttgcacttcatccccatgcgggtctcatcaa 2738672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 17934587 - 17934551
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  17934587 aggtctttgcacttcatccccatacgggtctcatcaa 17934551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 20052439 - 20052475
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  20052439 aggtctttgcacttcatccccatgcgggtctcatcaa 20052475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 22714912 - 22714948
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  22714912 aggtctttgcacttcatccccatgcgggtctcatcaa 22714948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 39684750 - 39684714
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  39684750 aggtctttgcacttcatccccatgcgggtctcatcaa 39684714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 32477106 - 32477347
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32477106 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 32477205  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32477206 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 32477305  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    | ||||||||||| ||||||||||||||||||||||||||||    
T  32477306 ctacaaaaccttctggttgctccatgtagattgtctcttcaa 32477347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 2675541 - 2675300
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||    
T  2675541 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacgcaagagtcatatccgcttctcacaaaaccg 2675442  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2675441 gtcttcaaaagaaactcatcaaaccgaccataccattgcctaaggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 2675342  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2675341 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 2675300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 22171629 - 22171388
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22171629 catcaagatatcatccacatataaaagaagatagagaataaatttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 22171530  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    ||||  |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22171529 gtctttaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 22171430  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22171429 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 22171388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 1307637 - 1307875
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  1307637 catcaagatatcatccacatataaaagaaggtagagaatgaatttctcactcttcttcaacatgtacacataagaatcatatccgcttctcacaaaaccg 1307736  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1307737 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 1307836  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctctt 254  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  1307837 ccacaaaaccttctggttgctccatgtagattgtctctt 1307875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 8513860 - 8514101
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8513860 catcaagatatcatccacatataaaagaagatagagaatgactttctcgttcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 8513959  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8513960 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagtgctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 8514059  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    | ||||||||||| ||||||||||||||||||||||||||||    
T  8514060 ctacaaaaccttctggttgctccatgtagattgtctcttcaa 8514101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 16256835 - 16257076
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  16256835 catcaagatatcatcaacatataaaacaaggtagagaatgactttctcactcctcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 16256934  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    ||||  |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16256935 gtctttaaaagaaattcatcaaatcgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 16257034  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  16257035 ccacaaaaccttctggttgctccatgtagattgtctcttcaa 16257076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 258 - 452
Target Start/End: Complemental strand, 2674842 - 2674648
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2674842 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 2674743  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatc 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  2674742 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaagtctttacacttcatccccattcgggtctcatc 2674648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 22170930 - 22170734
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22170930 ttctctatcttttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttaa 22170831  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22170830 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatacgggtctcatcaa 22170734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 258 - 452
Target Start/End: Original strand, 8514559 - 8514753
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8514559 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttctacatcttcttcttcttca 8514658  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatc 452  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8514659 tttggaagctccacctcaaactgagttctctccaccatagtttccggtacttgagtctctaagtctttacacttcatccccatccgggtctcatc 8514753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 258 - 452
Target Start/End: Original strand, 32477805 - 32477999
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32477805 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttctacatcttcttcttcttca 32477904  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatc 452  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32477905 tttggaagctccacctcaaactgagttctctccaccatagtttccggtacttgagtctctaagtctttacacttcatccccatccgggtctcatc 32477999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 1308336 - 1308532
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1308336 ttctctatctctagccaagagataatccggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttctacatcttcttcttcttca 1308435  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  1308436 tttggaagctccacctcaaactgagttttctccaccattgtttccggtactaaagtctctaggtctttacacttcatccccatacgggtctcatcaa 1308532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 3326148 - 3325964
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||| ||||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||           ||| |||||    
T  3326148 ttctttatctctagctaaaagatagtcaggatccactaccggttgagttccacttgtatctgatgttgaagcttcatctt-----------tct-cttca 3326061  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  3326060 tttggaagctccacctcaaattgagttttctccaccattgtttccggtactaaagtctctaggtctttacacttcatccccatacgggtctcatcaa 3325964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 131 - 257
Target Start/End: Complemental strand, 3326732 - 3326606
Alignment:
Q  131 tcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaaaccttccg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| || ||||||||||| |    
T  3326732 tcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacattccttagatttgtcttctacaaaaccttctg 3326633  T
Q  231 gttgctccatgtagattgtctcttcaa 257  Q
    |||||||||||||||||||||||||||    
T  3326632 gttgctccatgtagattgtctcttcaa 3326606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 10609605 - 10609837
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||||||||| || |||||||||||||||||||||||| ||||  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  10609605 atatcatccacataaaggagaaggtagagaatgactttctcattctttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 10609704  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||| ||| || || |  ||||| || || ||    
T  10609705 ctaggaactcatcaaaccgacgataccactaccttggactttgcttcaacccatacaaagatttcttcaaaaaacaaacttttgtattgtcttctacgaa 10609804  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  10609805 accttctggttgttgcatatagatagtttcttc 10609837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 22622957 - 22623189
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  22622957 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 22623056  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||| || || |  ||||| || |||||    
T  22623057 ctaggaactcatcaaaccgacgataccattgccttggactttgcttcaacccatacaaagatttcttcaacaaacatacttttgtattgtcttctacaaa 22623156  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  22623157 accttctggttgttgcatatagatagtttcttc 22623189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 3326810 - 3326735
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaa 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  3326810 catcaagatatcatccacatatagaagaaggtagagaatgactttctcacccatcttcaacatgtacacacaagaa 3326735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 10900358 - 10900126
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| |||||||| |||||||||||||||||| || |  ||| |||||| ||| ||  ||||||   ||||||||||||| | | ||  |    
T  10900358 atatcatctacataaagaagaagatagagaatgactttctcattccttctcatcatgtaaacataactatcatagttgcttctcacaaaaccagccttta 10900259  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| |  || ||    
T  10900258 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttatacgaa 10900159  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||||| ||| ||||| || |||||    
T  10900158 accttctggttgctgcatatagatagtttcttc 10900126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 47879721 - 47879953
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || |||||||||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  47879721 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 47879820  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  || ||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  47879821 ctaggaattcatcaatccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 47879920  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  47879921 accttctggttgttgcatatagatagtttcttc 47879953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 54191857 - 54191625
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  54191857 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 54191758  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||| || || |  ||||| || |||||    
T  54191757 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacatacttttgtattgtcttctacaaa 54191658  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  54191657 accttctggttgttgcatatagatagtttcttc 54191625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 10095638 - 10095870
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  10095638 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 10095737  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||| || | |||||| || |  ||||| || |||||    
T  10095738 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccgtacaaagatttcttgaacaaacacacttttgtattgtcttctacaaa 10095837  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  10095838 accttctggttgttgcatatagatagtttcttc 10095870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 16460813 - 16460609
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || |||||||||||||| ||||||||| || |  ||| |||||| ||||||   |||||   ||||||||||||| | | ||  |    
T  16460813 atatcatctacataaaggagaaggtagagaatcactttctcattccttctcatcatgtaaacacaactgtcatagttgcttctcacaaaaccagccttta 16460714  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  16460713 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 16460614  T
Q  223 acctt 227  Q
    |||||    
T  16460613 acctt 16460609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 10202524 - 10202756
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  10202524 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 10202623  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | |||||| || |  ||||| || |||||    
T  10202624 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccgtacaaatatttcttgaacaaacacacttttgtattgtcttctacaaa 10202723  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  10202724 accttctggttgttgcatatagatagtttcttc 10202756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 9149678 - 9149586
Alignment:
Q  17 atcaagatatcatccacatatagaagaaggtagagaatgactttctcactctt-cttcaacatgtacacacaagaatcatatccgcttctcacaa 110  Q
    |||||||||||||||  |||| | ||||||||||||||||||||||| ||||| ||| ||||||||| ||||| ||||||| |||||||||||||    
T  9149678 atcaagatatcatccgtatat-gtagaaggtagagaatgactttctc-ctctttctttaacatgtacgcacaaaaatcatacccgcttctcacaa 9149586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 6305814 - 6305778
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  6305814 aggtctttgcacttcatccccatgcgggtctcatcaa 6305778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 10096484 - 10096520
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  10096484 aggtctttgcacttcatccccatgcgggtctcatcaa 10096520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 10203370 - 10203406
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  10203370 aggtctttgcacttcatccccatgcgggtctcatcaa 10203406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 10610451 - 10610487
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  10610451 aggtctttgcacttcatccccatgcgggtctcatcaa 10610487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 10899512 - 10899476
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  10899512 aggtctttgcacttcatccccatgcgggtctcatcaa 10899476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 16459967 - 16459931
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  16459967 aggtctttgcacttcatccccatgcgggtctcatcaa 16459931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 29911631 - 29911667
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  29911631 aggtctttgcacttcatccccatgcgggtctcatcaa 29911667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 54191011 - 54190975
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  54191011 aggtctttgcacttcatccccatgcgggtctcatcaa 54190975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 706 - 465
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  706 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 607  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  606 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtctt 507  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  506 ccacaaaaccttcaggttgctccatgtagattgtctcttcaa 465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 14740892 - 14740652
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |    
T  14740892 catcaagatatcatccacatataaaagaagatagagaatgtctttctcactcttcttcaacatgtacacaca-gaatcatatccgcttctcacaaaactg 14740794  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14740793 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 14740694  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14740693 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 14740652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 33334397 - 33334156
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33334397 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 33334298  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33334297 gtcttcaaaagaaactcatcaaactgacgataccattgcctagggctttgcttcaacccgtacaaagatttcttcaaaagacacaccttagacttgtcct 33334198  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  33334197 ccacaaaaccttccggttgttccatgtagattgtctcttcaa 33334156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 33333698 - 33333502
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33333698 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatcttctacatcttcttcttcttca 33333599  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33333598 tttggaagctccacctcaaactgagttctctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 33333502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 14740194 - 14739998
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14740194 ttctctatctctagccaataggtactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcgtcatcttctacatcttcttcttcttca 14740095  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  14740094 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctttaggtctttacacttcatccccatacgggtctcatcaa 14739998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 24714559 - 24714730
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||    
T  24714559 catcaagatatcatacacatataaaagaaggtagagaatgactttctcacccttcttcaacatgtacatacaagaatcatagccgcttctcacaaaaccg 24714658  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaa 193  Q
    |||| ||||| ||| |||||||||||||||      |||||||||||||||||||| |||||||||||||||||||||    
T  24714659 gtcttcaaaagaaattcatcaaaccgacga------tgcctagggctttgcttcaatccatacaaagatttcttcaaa 24714730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 24433942 - 24433746
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    ||||||||||||| | |  ||||| ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||  | || | ||  ||||||    
T  24433942 ttctctatctcttccaagaagataatcaggatccactaccagttgagttccacttgtattcgatgttgaagcttcatcttcctcgtcatttttctcttca 24433843  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    | |||||||||||||||||| ||||||| |||||||   ||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||    
T  24433842 tgtggaagctccacctcaaattgagtttcctccacccatgtttccggtactaaagtctctaggtctttagacttcatccccatacgggtctcatcaa 24433746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 13882088 - 13881856
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || || ||||||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  13882088 atatcatctacataaaggaggaggtagagaatgactttctcattccttctcatcatgtatacacaactatcatagttgcttctcacaaaaccagccttta 13881989  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  13881988 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 13881889  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  13881888 accttctggttgttgcatatagatagtttcttc 13881856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 35202895 - 35203127
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  35202895 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 35202994  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  35202995 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 35203094  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  35203095 accttctggttgttgcatatagatagtttcttc 35203127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 17691789 - 17691862
Alignment:
Q  128 aactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacac 201  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||    
T  17691789 aactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaataaacacac 17691862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 25944911 - 25944786
Alignment:
Q  130 ctcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaaaccttcc 229  Q
    ||||||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | |||||| || |  ||||| || |||||||||||     
T  25944911 ctcatcaaaccgacgataccactgccttggactttgcttcaacccgtacaaaaatttcttaaacaaacacacttttgtattgtcttctacaaaaccttct 25944812  T
Q  230 ggttgctccatgtagattgtctcttc 255  Q
    ||||| | ||| ||||| || |||||    
T  25944811 ggttgttgcatatagatagtttcttc 25944786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 22347917 - 22347983
Alignment:
Q  135 caaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacac 201  Q
    |||||||||||||||  ||||| || ||||||||||||||||||||| |||||||||| | ||||||    
T  22347917 caaaccgacgatacctctgccttggactttgcttcaacccatacaaatatttcttcaacaaacacac 22347983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 22345832 - 22345923
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatc 114  Q
    |||||||| |||||||| ||||| |||||||||||||||||| || |  ||| |||||| ||||||  ||||||   |||||||||||||||    
T  22345832 atatcatctacatataggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaatc 22345923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 454
Target Start/End: Original strand, 17692527 - 17692566
Alignment:
Q  415 tctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  17692527 tctaggtctttgcacttcatccccatgcgggtctcatcaa 17692566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 13881242 - 13881206
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  13881242 aggtctttgcacttcatccccatgcgggtctcatcaa 13881206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 22348653 - 22348689
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  22348653 aggtctttgcacttcatccccatgcgggtctcatcaa 22348689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 25944172 - 25944136
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  25944172 aggtctttgcacttcatccccatgcgggtctcatcaa 25944136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 35203741 - 35203777
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  35203741 aggtctttgcacttcatccccatgcgggtctcatcaa 35203777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 41395716 - 41395912
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41395716 ttctctatctctagccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttccacatcttcttcttcttca 41395815  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41395816 tttggaagctccacctcaaactgagttttctccaccatagtttctggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 41395912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 47702357 - 47702117
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| |||||| ||    
T  47702357 catcaagatatcatcaacatatagaagaaggtagagaatgactttctcacccctcttcaacatgt-cacacaagaatcatatccgcttcttacaaaaccg 47702259  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
    || ||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  47702258 gtttccaaaagaaattcatcaaactgatgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgttct 47702159  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  47702158 ccacaaaaccttctggttgctccatgtagattgtctcttcaa 47702117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 47101328 - 47101087
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||  ||    
T  47101328 catcaacatatcatccacatataaaagaagttagagaatgactttctcaccccttttcaacatgtatacacaagaatcatatccgcttctcacaaatccg 47101229  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
     ||| ||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  47101228 atcttcaaaagaaattcatcaaaccgacgataccattgtctatggctttgcttcaacctatacaaagatttcttcaaaagacataccttagacttgtcct 47101129  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  47101128 ccacaaaaccttccagttgctccatgtagattgtctcttcaa 47101087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 19369307 - 19369111
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19369307 ttctctatctctagccaagagataatccggatccactaccggttgagtttcacttgtatccgatgtcgaagcttcatcttctacatcttcatcttcttca 19369208  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||    
T  19369207 tttggaagctccacctcaaactgagttttctccaccattgtttccggtactaaagtctctaggtctttacacttaatccccatacgggtctcatcaa 19369111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 41395102 - 41395258
Alignment:
Q  101 cttctcacaaaatcggtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacaca 200  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41395102 cttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttggttcaacccatacaaagatttcttcaaaagacaca 41395201  T
Q  201 ccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41395202 ccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 41395258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 41392218 - 41392307
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttct 105  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41392218 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttct 41392307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 9525077 - 9524845
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||| ||||| || |||||||||||||||||||||||| || |  ||| |||||| ||||||  ||||||   ||||||||||||| | | ||  |    
T  9525077 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 9524978  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctccacaaa 222  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| || |  ||||| || |||||    
T  9524977 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 9524878  T
Q  223 accttccggttgctccatgtagattgtctcttc 255  Q
    |||||| ||||| | ||| ||||| || |||||    
T  9524877 accttctggttgttgcatatagatagtttcttc 9524845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 2396087 - 2396265
Alignment:
Q  23 atatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcggtctcca 122  Q
    |||||||  ||||| || |||||||||||||||||||||||| || |  ||| |||||| ||||||  ||||||   |||||||||||||   | ||  |    
T  2396087 atatcatatacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaactagccttta 2396186  T
Q  123 aaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacac 201  Q
      |  ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||    
T  2396187 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacac 2396265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 34689874 - 34689683
Alignment:
Q  17 atcaagatatcatccacatatagaagaaggtagagaatgactttctca-ctcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||| |||||||||| |||| |||| ||| ||||||||| ||||||| | ||| || || ||||| ||| || ||||||| ||  |||||||||||       
T  34689874 atcaatatatcatccatatattgaagtaggaagagaatgattttctcatcccttttttaatatgtaaacataataatcataaccttttctcacaaaacat 34689775  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttaga 207  Q
    || | ||||| |||||||||||||| | || |||||| |||  |||| || |||||| ||||||||| ||| ||| ||||||||||||||||    
T  34689774 gtgttcaaaagaaactcatcaaacccatgacaccatttccttaggctatgtttcaacacatacaaaggtttgttctaaagacacaccttaga 34689683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 34694402 - 34694211
Alignment:
Q  17 atcaagatatcatccacatatagaagaaggtagagaatgactttctca-ctcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||| |||||||||| |||| |||| ||| ||||||||| ||||||| | ||| || || ||||| ||| || ||||||| ||  |||||||||||       
T  34694402 atcaatatatcatccatatattgaagtaggaagagaatgattttctcatcccttttttaatatgtaaacataataatcataaccttttctcacaaaacat 34694303  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttaga 207  Q
    || | ||||| |||||||||||||| | || |||||| |||  |||| || |||||| ||||||||| ||| ||| ||||||||||||||||    
T  34694302 gtgttcaaaagaaactcatcaaacccatgacaccatttccttaggctatgtttcaacacatacaaaggtttgttctaaagacacaccttaga 34694211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 7155329 - 7155150
Alignment:
Q  77 atgtacacacaagaatcatatccgcttctcacaaaatcggtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccat 176  Q
    ||||||||| |||||||||||||  ||||| || || |||||| ||||| ||| |  |||||| ||||||||||||     |||||||| |||||  |||    
T  7155329 atgtacacataagaatcatatcc--ttctcccacaaccggtcttcaaaagaaatttctcaaactgacgataccattcatgtgggctttgtttcaaggcat 7155232  T
Q  177 acaaagatttctt-caaaagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    |||||||||| || |||||||||   ||||  ||| || | ||||||||||||  ||| ||||||||| ||| |||||||||    
T  7155231 acaaagatttttttcaaaagacatgtcttaaccttatctttcacaaaaccttctagttactccatgtatattatctcttcaa 7155150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 2396933 - 2396969
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  2396933 aggtctttgcacttcatccccatgcgggtctcatcaa 2396969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 9524231 - 9524195
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  9524231 aggtctttgcacttcatccccatgcgggtctcatcaa 9524195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 41131112 - 41131045
Alignment:
Q  19 caagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacaca 87  Q
    ||||||||||||||||||||| | ||| ||||||  ||||||| ||| ||||||||| ||||| |||||    
T  41131112 caagatatcatccacatatagta-aagatagagatcgactttcacacacttcttcaatatgtagacaca 41131045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 33806 - 34046
Alignment:
Q  16 catcaagatatcatccacatatagaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 115  Q
    ||||||||||||||| ||||||| |||||| || |||||||||| || |  |||||| ||||| |||||||||||||||||   |||||| | ||| | |    
T  33806 catcaagatatcatctacatataaaagaagttatagaatgacttcctaagccttctttaacatatacacacaagaatcatacatgcttctaaaaaact-g 33904  T
Q  116 gtctccaaaataaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 215  Q
     ||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33905 atcttcaaaagaaactcatcaaaccgacgataccatttcctaggactttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcct 34004  T
Q  216 ccacaaaaccttccggttgctccatgtagattgtctcttcaa 257  Q
    || |||||||||| ||||||||||||||||||||||||||||    
T  34005 ccccaaaaccttctggttgctccatgtagattgtctcttcaa 34046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 258 - 449
Target Start/End: Original strand, 34503 - 34697
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||| ||| ||||| ||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||    
T  34503 ttctctatatctagccaaaagatagtcaggatccactattggttgagttccacttgtatccgatgtcgaagcttcatcctccacatcttcttcttcatca 34602  T
Q  358 t---ttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctc 449  Q
    |   ||||||||||||||||| ||| ||||| ||||||| | ||||||||| ||  ||||| ||||||| ||||||| |||||||| || |||||    
T  34603 tcaattggaagctccacctcacacttagtttactccacccttgtttccggtgctaaagtctataggtctgtacactttatccccatacgtgtctc 34697  T

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Target: scaffold0006 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 286 - 454
Target Start/End: Original strand, 1 - 169
Alignment:
Q  286 ggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttcatttggaagctccacctcaaactgagttt 385  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1 ggatccactaccggttgagttccaattgtatccaatgttgaagcttcatcttctacatcatcttcttcttcatttggaagctccacctcaaactgagttt 100  T
Q  386 tctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
     ||||||||| ||||| ||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  101 cctccaccattgtttctggtactaaagtctctaggtctttacacttcatccccatacgggtctcatcaa 169  T

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Target: scaffold0006; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 8129 - 8325
Alignment:
Q  258 ttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttctacatcttcttcttcttca 357  Q
    |||||||||||| ||||| ||||  ||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||    
T  8129 ttctctatctctagccaagagatgatcaggatccactaccggttgagttccaattgtatccaatgttgaagcttcatcttctacatcatcttcttcttca 8228  T
Q  358 tttggaagctccacctcaaactgagttttctccaccatagtttccggtacttgagtctctaggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||||||||||||||||||||||| |||||||||  |||  |||| |  ||| |||||||||||||||||||||||||| |||||||||||||    
T  8229 tttggaagctccacctcaaactgagtttcctccaccattttttttggtattaaagtttctaggtctttacacttcatccccatacgggtctcatcaa 8325  T

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Target: scaffold0256 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 18829 - 18793
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  18829 aggtctttgcacttcatccccatacgggtctcatcaa 18793  T

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Target: scaffold0209 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 822 - 858
Alignment:
Q  418 aggtctttacacttcatccccatccgggtctcatcaa 454  Q
    |||||||| |||||||||||||| |||||||||||||    
T  822 aggtctttgcacttcatccccatgcgggtctcatcaa 858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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