View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8641_low_8 (Length: 370)
Name: NF8641_low_8
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_8 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 4301712 - 4302064
Alignment:
| Q |
1 |
gaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccgagtgaccaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301712 |
gaaccataaccaatgagcaaataaacatggatattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccgagtgaccaaaa |
4301811 |
T |
|
| Q |
101 |
atcaccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagtgtcttgctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301812 |
atcaccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagtgtcttgctgat |
4301911 |
T |
|
| Q |
201 |
tgaataaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagattaattgacttt |
300 |
Q |
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| T |
4301912 |
tgaataaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagattaattgacttt |
4302011 |
T |
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| Q |
301 |
ggaagagaatatttgaagtattggcaatccaagctccgattagagaacaaaga |
353 |
Q |
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| T |
4302012 |
ggaagagaatatttgaagtattggcaatccaagctccgattagagaacaaaga |
4302064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 33101165 - 33101517
Alignment:
| Q |
1 |
gaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccgagtgaccaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
33101165 |
gaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaattaaagagcttgaagaccgagtgaccaaaa |
33101264 |
T |
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| Q |
101 |
atcaccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagtgtcttgctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
33101265 |
atcaccaccccttatgactgctaattccacactactaataggaacaaaactatctggtgtgcttatcaaatagtttgcatgaacaaagcgtcttgcatat |
33101364 |
T |
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| Q |
201 |
tgaataaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagattaattgacttt |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |
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| T |
33101365 |
tgaataaagcatgagaaagcaagaaggaaacaggttaataaacaaatgtacttgatggaaactgcggttgcactcgtgtcaccatagattaattgactct |
33101464 |
T |
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| Q |
301 |
ggaagagaatatttgaagtattggcaatccaagctccgattagagaacaaaga |
353 |
Q |
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|||||| ||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
33101465 |
ggaagaaaatatttgaagtattagcaatccaagctccaattagagaacaaaga |
33101517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 87153 - 87485
Alignment:
| Q |
1 |
gaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccgagtgaccaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| ||||||||||||| |
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| T |
87153 |
gaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcgagttaagtgcaaaataaataccttgaagatcgagtgaccaaaa |
87252 |
T |
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| Q |
101 |
atcaccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagtgtcttgctgat |
200 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
87253 |
atcaccacctcttatgactgctaattccacactactaataggaacaaaactatctggtgtgcttatcaaatagtttgcatgaaaaaagtgtcttgcagat |
87352 |
T |
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| Q |
201 |
tgaataaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagattaattgacttt |
300 |
Q |
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|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||| | |
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| T |
87353 |
tgaataaagcatgagaaaccaagaaggacacaggttaataagcaaatgtacttgatggaaactgcggttgccctcgtgtcaccatagatttattgactct |
87452 |
T |
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| Q |
301 |
ggaagagaatatttgaagtattggcaatccaag |
333 |
Q |
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|||||| ||||||||||||||| ||| |||||| |
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| T |
87453 |
ggaagaaaatatttgaagtattagcagtccaag |
87485 |
T |
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