View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8641_low_9 (Length: 329)
Name: NF8641_low_9
Description: NF8641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8641_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 37129030 - 37129245
Alignment:
| Q |
19 |
caaaaactattttttgatcgacannnnnnnncagggttgagcgacctaagaacctaaagaacaaccttattatccttatcaattcatgctatgtttcagg |
118 |
Q |
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| T |
37129030 |
caaaaactattttttgatcgacattttttttcagggttgagcgacctaagaacctaaagaacaaccttattatccttatcaattcatgctatgtttcagg |
37129129 |
T |
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| Q |
119 |
ctaatttaagagggtccctgttaacccattttagcatcccctactcataagagcatttttttctacccatcag-annnnnnnnngcaattacttatacct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
37129130 |
ctaatttaagagggtccctgttaacccattttagcatcccctactcataagagcatttttttctacccatcagaatttttttttgcaattacttatacct |
37129229 |
T |
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| Q |
218 |
gtcagctcaattacct |
233 |
Q |
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|||||||||||||||| |
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| T |
37129230 |
gtcagctcaattacct |
37129245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 37129236 - 37129307
Alignment:
| Q |
247 |
tcaattacctatacgaggcattgagcttgctttcctgattttacacgcttgtataccattttcttcattcat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37129236 |
tcaattacctatacgaggcattgagcttgctttcctgattttacacgcttgtagaccattttcttcattcat |
37129307 |
T |
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