View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8642_high_3 (Length: 306)
Name: NF8642_high_3
Description: NF8642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8642_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 42335725 - 42336002
Alignment:
| Q |
17 |
aaaccaagttcatcatcaatggtggcgcgtggcacaacattaagtctatcagaattttctcgcaacacaatctagttaaacaaaaatattactctaattg |
116 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
42335725 |
aaaccaagtccatcatcaatggtggcgcgtggaacaacattaagtctatcagaattttctcgcgacacaatctagttaaacaaaaatattattctaattg |
42335824 |
T |
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| Q |
117 |
atccatgacataaaatcggtctttctatcattacaattgtcacctatatat-aaaataattacatgattaatttaattttttgttagaactaaattgaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
42335825 |
atccatgacataaaatcggtctttctatcattacaattgtcacctatatataaaaaaaattacacgattaatttaa-tttttgttagaactaaattgaac |
42335923 |
T |
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| Q |
216 |
catcagaaaattgcgacgaacaaaaacatatattcaagggaagtnnnnnnnnntgcattgcacaaaaccaacgtgtgtg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
42335924 |
catcagaaaattgcgacgaacaaaaacatatattcaagggaagtaaaaaaaaatgcattgcacaaaaccaacttgtgtg |
42336002 |
T |
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